RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1120586" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120586 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
276150 276150 PRJNA1120586_P_NODE_38041_length_239_cov_1.282353_g37850_i0 PRJNA1120586 38041 239 1.282353 3.06482367 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 425 1.1e-114   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g37850 i0 98.745 169.836820083682 239 3 100 0 1 239 582 820 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 40591 425 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
1028381 1028381 PRJNA1120586_P_NODE_28441_length_265_cov_1.846939_g28250_i0 PRJNA1120586 28441 265 1.846939 4.89438835 Akkermansia 239934 Bacteria Bacteria 490 4.3299999999999986e-134   NTclustered gi|1888387165|gb|CP058562.1| 239935 g28250 i0 100 296 265 0 100 0 1 265 139143 139407 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 78440 490 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
9204105 9204105 PRJNA1120586_P_NODE_37928_length_239_cov_1.694118_g37737_i0 PRJNA1120586 37928 239 1.694118 4.04894202 uncultured Verrucomicrobiales bacterium 100234 Bacteria Bacteria 372 1.45e-98   NTclustered gi|220682330|gb|FJ542937.1| 100234 g37737 i0 94.958 99.6610878661088 238 10 99 2 3 239 545 309 Uncultured Verrucomicrobiales bacterium clone B01-06A 16S ribosomal RNA gene, partial sequence blastn 23819 372 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     uncultured Verrucomicrobiales bacterium
18128219 18128219 PRJNA1120586_P_NODE_8155_length_413_cov_2.223837_g7964_i0 PRJNA1120586 8155 413 2.223837 9.18444681 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 675 0   NTclustered gi|2874253768|emb|OY969715.1| 412056 g7964 i0 96.126 189.217917675545 413 16 100 0 1 413 915205 915617 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 78147 675 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;