RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1120586" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120586 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14305305 14305305 PRJNA1120586_P_NODE_54772_length_212_cov_2.552448_g54581_i0 PRJNA1120586 54772 212 2.552448 5.41118976 Pendulispora rubella 2741070 Bacteria Bacteria 230 8.02e-56   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g54581 i0 86.256 278.830188679245 211 29 99 0 1 211 7287286 7287076 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 59112 230 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
14305308 14305308 PRJNA1120586_P_NODE_55212_length_194_cov_5.760000_g55021_i0 PRJNA1120586 55212 194 5.76 11.1744 Pendulispora albinea 2741071 Bacteria Bacteria 147 7.469999999999999e-31   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g55021 i0 84.314 145.494845360825 153 21 78 2 1 152 3588205 3588055 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 28226 147 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
23228772 23228772 PRJNA1120586_P_NODE_7179_length_434_cov_7.745205_g6988_i0 PRJNA1120586 7179 434 7.745205 33.6141897 Chondromyces crocatus 52 Bacteria Bacteria 431 4.61e-116   NTclustered gi|908353314|gb|CP012159.1| 52 g6988 i0 85.442 130.520737327189 419 55 95 6 3 416 1431233 1430816 Chondromyces crocatus strain Cm c5, complete genome blastn 56646 431 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;