RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1120586" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA1120586 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6653622 6653622 PRJNA1120586_P_NODE_14506_length_333_cov_3.784091_g14315_i0 PRJNA1120586 14506 333 3.784091 12.60102303 Murine leukemia-related retroviruses 99182 Viruses Viruses 604 1.9199999999999991e-168   NTclustered gi|539195857|gb|KF584020.1| 1394983 g14315 i0 99.399 99.993993993994 333 2 100 0 1 333 1882 1550 PreXMRV-1/PreXMRV-2 recombinant clone E-e1 envelope protein (env) gene, partial cds blastn 33298 604 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Murine leukemia-related retroviruses
16853066 16853066 PRJNA1120586_P_NODE_16374_length_320_cov_1.418327_g16183_i0 PRJNA1120586 16374 320 1.418327 4.5386464 Gammaretrovirus murleu 3428959 Viruses Viruses 586 6.65e-163   NTclustered gi|38155073|gb|AY349142.1| 11786 g16183 i0 99.688 94.96875 320 1 100 0 1 320 339 20 Murine leukemia virus isolate SP(B)2 unknown mRNA blastn 30390 586 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;