RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1120586" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1120586 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1550866 1550866 PRJNA1120586_P_NODE_46402_length_230_cov_0.894410_g46211_i0 PRJNA1120586 46402 230 0.89441 2.057143 Trebouxiophyceae sp. MX-AZ01 1208065 Plants Plants 75 4.38e-9   NTclustered gi|409052422|ref|NC_018568.1| 1208065 g46211 i0 81.522 0.4 92 15 40 2 20 110 72909 72999 Trebouxiophyceae sp. MX-AZ01 mitochondrion, complete genome blastn 92 75 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       Trebouxiophyceae sp. MX-AZ01
9956470 9956470 PRJNA1120586_P_NODE_41888_length_233_cov_41.182927_g41697_i0 PRJNA1120586 41888 233 41.182927 95.95621991 Eukaryota 2759 Plants Plants 431 2.2899999999999996e-116   NTclustered gi|1714003650|gb|MN243923.1| 3079 g41697 i0 100 100 233 0 100 0 1 233 765 533 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 23300 431 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
20677864 20677864 PRJNA1120586_P_NODE_53077_length_226_cov_0.917197_g52886_i0 PRJNA1120586 53077 226 0.917197 2.07286522 Koliella corcontica 155904 Plants Plants 272 1.42e-68   NTclustered gi|723456950|ref|NC_025536.1| 155904 g52886 i0 89.352 111.296460176991 216 23 96 0 1 216 83333 83548 Koliella corcontica culture-collection SAG:24.84 chloroplast, complete genome blastn 25153 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella corcontica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;