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contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA1120586" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 23 ✖

bioproject 1

  • PRJNA1120586 · 23 ✖

analysis 1

  • blastn · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1028305 1028305 PRJNA1120586_P_NODE_11741_length_360_cov_2.189003_g11550_i0 PRJNA1120586 11741 360 2.189003 7.8804108 Eukaryota 2759 Plants Plants 665 0   NTclustered gi|194703753|gb|BT040956.1| 4577 g11550 i0 100 85.7583333333333 360 0 100 0 1 360 1147 788 Zea mays full-length cDNA clone ZM_BFc0156E02 mRNA, complete cds blastn 30873 665 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
2303811 2303811 PRJNA1120586_P_NODE_53582_length_222_cov_2.562092_g53391_i0 PRJNA1120586 53582 222 2.562092 5.68784424 Eukaryota 2759 Plants Plants 409 1.0100000000000001e-109   NTclustered gi|8547146|gb|AF154646.1| 4097 g53391 i0 100 2.98648648648649 221 0 99 0 1 221 959 1179 Nicotiana tabacum clone PR30 mRNA sequence blastn 663 409 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana tabacum
2303836 2303836 PRJNA1120586_P_NODE_7182_length_434_cov_3.438356_g6991_i0 PRJNA1120586 7182 434 3.438356 14.92246504 Eukaryota 2759 Plants Plants 719 0   NTclustered gi|194703753|gb|BT040956.1| 4577 g6991 i0 100 89.5622119815668 389 0 90 0 46 434 334 722 Zea mays full-length cDNA clone ZM_BFc0156E02 mRNA, complete cds blastn 38870 719 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
3578984 3578984 PRJNA1120586_P_NODE_28683_length_264_cov_3.502564_g28492_i0 PRJNA1120586 28683 264 3.502564 9.24676896 Vicia 3904 Plants Plants 488 1.5499999999999999e-133   NTclustered gi|1878849250|gb|MT796586.1| 3909 g28492 i0 100 100.003787878788 264 0 100 0 1 264 1214 1477 Vicia sativa subsp. nigra isolate DM378 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26401 488 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Vicia Vicia sativa
5379412 5379412 PRJNA1120586_P_NODE_44705_length_231_cov_1.777778_g44514_i0 PRJNA1120586 44705 231 1.777778 4.10666718 Hordeum vulgare 4513 Plants Plants 99 2.61e-16   NTclustered gi|2133614081|ref|XR_006610545.1| 112509 g44514 i0 85 31.0909090909091 100 12 43 2 131 229 1781 1878 PREDICTED: Hordeum vulgare subsp. vulgare 28S ribosomal RNA (LOC123400256), rRNA blastn 7182 99 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
7929259 7929259 PRJNA1120586_P_NODE_50027_length_228_cov_0.905660_g49836_i0 PRJNA1120586 50027 228 0.90566 2.0649048 Oryza sativa 4530 Plants Plants 383 6.35e-102   NTclustered gi|32973086|dbj|AK063068.1| 39947 g49836 i0 96.93 5.06140350877193 228 7 100 0 1 228 633 406 Oryza sativa Japonica Group cDNA clone:001-110-G10, full insert sequence blastn 1154 383 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
10479577 10479577 PRJNA1120586_P_NODE_26689_length_271_cov_1.425743_g26498_i0 PRJNA1120586 26689 271 1.425743 3.86376353 Oryza sativa 4530 Plants Plants 490 4.44e-134   NTclustered gi|32994234|dbj|AK109025.1| 39947 g26498 i0 99.262 1 271 2 100 0 1 271 282 552 Oryza sativa Japonica Group cDNA clone:002-154-B05, full insert sequence blastn 271 490 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
10479583 10479583 PRJNA1120586_P_NODE_2689_length_644_cov_4.252174_g2506_i0 PRJNA1120586 2689 644 4.252174 27.38400056 Vicia sativa 3908 Plants Plants 1168 0   NTclustered gi|1878849250|gb|MT796586.1| 3909 g2506 i0 99.379 100 644 4 100 0 1 644 5124 4481 Vicia sativa subsp. nigra isolate DM378 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 64400 1168 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Vicia Vicia sativa
11754930 11754930 PRJNA1120586_P_NODE_51270_length_227_cov_0.911392_g51079_i0 PRJNA1120586 51270 227 0.911392 2.06885984 Cephalomitrion aterrimum 1527703 Plants Plants 119 1.97e-22   NTclustered gi|671724742|gb|KF851759.1| 1527703 g51079 i0 91.765 37.5286343612335 85 7 37 0 15 99 321 237 Cephalomitrion aterrimum isolate L1226 26S large subunit ribosomal RNA gene, partial sequence blastn 8519 119 1 Eukaryota Embryophyta Viridiplantae Streptophyta Jungermanniopsida Jungermanniales Cephaloziellaceae Cephalomitrion Cephalomitrion aterrimum
13029600 13029600 PRJNA1120586_P_NODE_21051_length_294_cov_1.280000_g20860_i0 PRJNA1120586 21051 294 1.28 3.7632 Hordeum vulgare 4513 Plants Plants 532 7.989999999999998e-147   NTclustered gi|326497356|dbj|AK371065.1| 112509 g20860 i0 99.32 1 294 2 100 0 1 294 21 314 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2123O06 blastn 294 532 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
14305012 14305012 PRJNA1120586_P_NODE_38512_length_238_cov_1.023669_g38321_i0 PRJNA1120586 38512 238 1.023669 2.43633222 Sorghum bicolor 4558 Plants Plants 58.4 4.59e-4   NTclustered gi|33321007|gb|AF488412.1| 4558 g38321 i0 94.737 0.159663865546218 38 1 16 1 171 207 111881 111844 Sorghum bicolor BAC 131L1, complete sequence blastn 38 58.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Sorghum Sorghum bicolor
15578705 15578705 PRJNA1120586_P_NODE_22613_length_287_cov_1.197248_g22422_i0 PRJNA1120586 22613 287 1.197248 3.43610176 Vicia sativa 3908 Plants Plants 525 1.2999999999999995e-144   NTclustered gi|2753188135|emb|OZ078051.1| 3908 g22422 i0 100 99.8850174216028 284 0 99 0 1 284 87141 87424 Vicia sativa genome assembly, organelle: plastid:chloroplast blastn 28667 525 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Vicia Vicia sativa
15579276 15579276 PRJNA1120586_P_NODE_52913_length_226_cov_0.917197_g52722_i0 PRJNA1120586 52913 226 0.917197 2.07286522 Sorghum bicolor 4558 Plants Plants 357 3.81e-94   NTclustered gi|1205936758|ref|XM_002463060.2| 4558 g52722 i0 95.133 38.4867256637168 226 11 100 0 1 226 1511 1286 PREDICTED: Sorghum bicolor arabinosyltransferase RRA3 (LOC8078975), mRNA blastn 8698 357 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Sorghum Sorghum bicolor
17605990 17605990 PRJNA1120586_P_NODE_14914_length_330_cov_2.758621_g14723_i0 PRJNA1120586 14914 330 2.758621 9.1034493 Eukaryota 2759 Plants Plants 610 4.09e-170   NTclustered gi|194703603|gb|BT040881.1| 4577 g14723 i0 100 99.9606060606061 330 0 100 0 1 330 203 532 Zea mays full-length cDNA clone ZM_BFc0144J03 mRNA, complete cds blastn 32987 610 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
17606049 17606049 PRJNA1120586_P_NODE_27054_length_270_cov_1.293532_g26863_i0 PRJNA1120586 27054 270 1.293532 3.4925364 Eukaryota 2759 Plants Plants 499 7.349999999999998e-137   NTclustered gi|194707657|gb|BT042908.1| 4577 g26863 i0 100 53.9222222222222 270 0 100 0 1 270 1460 1729 Zea mays full-length cDNA clone ZM_BFc0062L18 mRNA, complete cds blastn 14559 499 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
20154890 20154890 PRJNA1120586_P_NODE_8976_length_398_cov_3.176292_g8785_i0 PRJNA1120586 8976 398 3.176292 12.64164216 Eukaryota 2759 Plants Plants 736 0   NTclustered gi|194707657|gb|BT042908.1| 4577 g8785 i0 100 98.8542713567839 398 0 100 0 1 398 311 708 Zea mays full-length cDNA clone ZM_BFc0062L18 mRNA, complete cds blastn 39344 736 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
21430337 21430337 PRJNA1120586_P_NODE_28237_length_266_cov_1.426396_g28046_i0 PRJNA1120586 28237 266 1.426396 3.79421336 Juglandaceae 16714 Plants Plants 486 5.629999999999999e-133   NTclustered gi|2082500535|ref|XR_006239152.1| 32201 g28046 i0 99.624 100 266 1 100 0 1 266 375 110 PREDICTED: Carya illinoinensis 18S ribosomal RNA (LOC122298097), rRNA blastn 26600 486 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Juglandaceae Carya Carya illinoinensis
21953138 21953138 PRJNA1120586_P_NODE_48678_length_229_cov_0.900000_g48487_i0 PRJNA1120586 48678 229 0.9 2.061 Zea mays 4577 Plants Plants 403 4.899999999999998e-108   NTclustered gi|55741096|gb|AY664419.1| 4577 g48487 i0 99.107 232.56768558952 224 2 98 0 1 224 309357 309580 Zea mays cultivar Mo17 locus 9009, complete sequence blastn 53258 403 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
22705362 22705362 PRJNA1120586_P_NODE_45858_length_231_cov_0.888889_g45667_i0 PRJNA1120586 45858 231 0.888889 2.05333359 Caprifoliaceae 4200 Plants Plants 416 6.349999999999998e-112   NTclustered gi|2258688133|ref|NC_064333.1| 134526 g45667 i0 99.134 7.06060606060606 231 2 100 0 1 231 276652 276422 Triosteum pinnatifidum mitochondrion, complete genome blastn 1631 416 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Dipsacales Caprifoliaceae Triosteum Triosteum pinnatifidum
23228325 23228325 PRJNA1120586_P_NODE_31879_length_255_cov_1.548387_g31688_i0 PRJNA1120586 31879 255 1.548387 3.94838685 Impatiens glandulifera 253017 Plants Plants 235 2.1399999999999997e-57   NTclustered gi|2217250433|ref|XM_047452740.1| 253017 g31688 i0 84.146 111.945098039216 246 36 96 3 3 247 345 102 PREDICTED: Impatiens glandulifera ubiquitin-40S ribosomal protein S27a-like (LOC124912179), mRNA blastn 28546 235 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Balsaminaceae Impatiens Impatiens glandulifera
23980607 23980607 PRJNA1120586_P_NODE_18219_length_309_cov_1.404167_g18028_i0 PRJNA1120586 18219 309 1.404167 4.33887603 Magnoliopsida 3398 Plants Plants 571 1.7899999999999995e-158   NTclustered gi|1381390543|ref|NC_037463.1| 2711 g18028 i0 100 108.171521035599 309 0 100 0 1 309 38577 38885 Citrus sinensis mitochondrion, complete genome blastn 33425 571 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus sinensis
24502291 24502291 PRJNA1120586_P_NODE_49740_length_228_cov_0.905660_g49549_i0 PRJNA1120586 49740 228 0.90566 2.0649048 Oryza sativa 4530 Plants Plants 394 2.93e-105   NTclustered gi|37989458|dbj|AK119835.1| 39947 g49549 i0 97.807 1 228 5 100 0 1 228 1823 1596 Oryza sativa Japonica Group cDNA clone:002-178-A12, full insert sequence blastn 228 394 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
25254676 25254676 PRJNA1120586_P_NODE_22700_length_286_cov_2.138249_g22509_i0 PRJNA1120586 22700 286 2.138249 6.11539214 Eukaryota 2759 Plants Plants 518 2.17e-142   NTclustered gi|1702291457|gb|MN174867.1| 82485 g22509 i0 99.301 107.045454545455 286 2 100 0 1 286 4013 4298 Trillium govanianum voucher CL1804 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 30615 523 0.990439770554493 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Liliales Melanthiaceae Trillium Trillium govanianum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;