RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1120586" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA1120586 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2826663 2826663 PRJNA1120586_P_NODE_29823_length_261_cov_1.500000_g29632_i0 PRJNA1120586 29823 261 1.5 3.915 Protacanthamoeba bohemica 325062 Discosea other_Eukaryota 339 1.63e-88   NTclustered gi|2806326584|gb|PQ345834.1| 325062 g29632 i0 90.805 25.1072796934866 261 13 100 10 1 261 403 154 Protacanthamoeba bohemica isolate 6FSb1 small subunit ribosomal RNA gene, partial sequence blastn 6553 339 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba bohemica
5379252 5379252 PRJNA1120586_P_NODE_35385_length_245_cov_2.312500_g35194_i0 PRJNA1120586 35385 245 2.3125 5.665625 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 370 5.38e-98   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g35194 i0 93.878 32.0530612244898 245 15 100 0 1 245 3964 4208 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7853 370 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
9204409 9204409 PRJNA1120586_P_NODE_55008_length_205_cov_4.176471_g54817_i0 PRJNA1120586 55008 205 4.176471 8.56176555 Centropyxis laevigata 318528 Tubulinea other_Eukaryota 379 7.229999999999999e-101   NTclustered gi|61655689|gb|AY848965.1| 318528 g54817 i0 100 6.49756097560976 205 0 100 0 1 205 335 131 Centropyxis laevigata small subunit ribosomal RNA gene, partial sequence blastn 1332 379 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis laevigata
14305005 14305005 PRJNA1120586_P_NODE_38052_length_239_cov_1.270588_g37861_i0 PRJNA1120586 38052 239 1.270588 3.03670532 Stenamoeba aeronauta 2971262 Discosea other_Eukaryota 357 4.07e-94   NTclustered gi|2283789716|gb|OP179856.1| 2971262 g37861 i0 93.802 47.3849372384937 242 8 100 4 1 239 1136 899 Stenamoeba aeronauta strain Stenaero small subunit ribosomal RNA gene, partial sequence blastn 11325 357 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba aeronauta
21953196 21953196 PRJNA1120586_P_NODE_5118_length_495_cov_5.368545_g4928_i0 PRJNA1120586 5118 495 5.368545 26.57429775 Vannella sp. GERL14 1002217 Discosea other_Eukaryota 752 0   NTclustered gi|327391632|gb|HM363630.1| 1002217 g4928 i0 96.137 95.5656565656566 466 8 92 6 39 495 476 12 Vannella sp. GERL14 small subunit ribosomal RNA gene, partial sequence blastn 47305 752 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. GERL14
23228124 23228124 PRJNA1120586_P_NODE_19399_length_302_cov_2.450644_g19208_i0 PRJNA1120586 19399 302 2.450644 7.40094488 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 551 2.2699999999999992e-152   NTclustered gi|300078496|gb|GU001158.1| 5778 g19208 i0 99.668 46.0198675496689 301 1 99 0 2 302 2522 2822 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13898 551 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23228274 23228274 PRJNA1120586_P_NODE_29219_length_263_cov_1.432990_g29028_i0 PRJNA1120586 29219 263 1.43299 3.7687637 Echinamoeba sp. CRIB-30 501619 Tubulinea other_Eukaryota 481 2.58e-131   NTclustered gi|167380466|gb|EU273832.1| 501619 g29028 i0 99.62 69.0038022813688 263 1 100 0 1 263 64 326 Echinamoeba sp. CRIB-30 18S ribosomal RNA gene, partial sequence blastn 18148 481 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba sp. CRIB-30

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;