RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1120203" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120203 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9203455 9203455 PRJNA1120203_P_NODE_88988_length_247_cov_0.885057_g87972_i0 PRJNA1120203 88988 247 0.885057 2.18609079 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 183 7.59e-42   NTclustered gi|2318755038|ref|XM_035733315.2| 6185 g87972 i0 87.821 5.4331983805668 156 19 63 0 2 157 2072 1917 Schistosoma haematobium BTB/POZ domain-containing protein kctd3 (KCTD3_1), partial mRNA blastn 1342 183 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium
17605596 17605596 PRJNA1120203_P_NODE_55514_length_303_cov_1.065217_g54498_i0 PRJNA1120203 55514 303 1.065217 3.22760751 Metazoa 33208 Platyhelminthes Platyhelminthes 549 8.209999999999997e-152   NTclustered gi|60687563|gb|AY914894.1| 6182 g54498 i0 99.34 100 303 2 100 0 1 303 261 563 Schistosoma japonicum unknown mRNA blastn 30300 549 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
21951309 21951309 PRJNA1120203_P_NODE_12998_length_845_cov_22.281088_g12081_i0 PRJNA1120203 12998 845 22.281088 188.2751936 Brachycladium goliath 1751714 Platyhelminthes Platyhelminthes 241 1.69e-58   NTclustered gi|1011058740|ref|NC_029757.1| 1751714 g12081 i0 76.89 7.4603550295858 463 83 54 18 380 835 2002 2447 Brachycladium goliath voucher NHMUK:2014.9.12.1 mitochondrion, complete genome blastn 6304 241 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Brachycladiidae Brachycladium Brachycladium goliath

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;