RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1120203" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1120203 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4855645 4855645 PRJNA1120203_P_NODE_31024_length_422_cov_1385.481375_g30009_i0 PRJNA1120203 31024 422 1385.481375 5846.7314025 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 732 0   NTclustered gi|1419234739|dbj|AP018511.1| 303400 g30009 i0 99.02 159.419431279621 408 4 97 0 13 420 848 1255 Nitzschia palea NIES-2729 chloroplast DNA complet genome blastn 67275 732 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia palea
24501428 24501428 PRJNA1120203_P_NODE_88060_length_247_cov_1.850575_g87044_i0 PRJNA1120203 88060 247 1.850575 4.57092025 Nitzschia sp. (in: diatoms) 1884248 SAR_Eukaryotes SAR_Eukaryotes 436 5.279999999999999e-118   NTclustered gi|2059554281|gb|MZ469822.1| 1884248 g87044 i0 99.582 150.502024291498 239 1 97 0 9 247 5 243 Nitzschia sp. (in: Bacillariophyta) strain DAD-ALGEUK-94 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 37174 436 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia sp. (in: diatoms)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;