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contig_metadata

28 rows where analysis = "blastn", bioproject = "PRJNA1120203" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 28 ✖

bioproject 1

  • PRJNA1120203 · 28 ✖

analysis 1

  • blastn · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1027873 1027873 PRJNA1120203_P_NODE_48181_length_325_cov_45.769841_g47165_i0 PRJNA1120203 48181 325 45.769841 148.75198325 Scenedesmus 3087 Plants Plants 263 1.3e-65   NTclustered gi|380692070|emb|HE717104.1| 1162821 g47165 i0 98.013 108.710769230769 151 3 90 0 173 323 152 2 Scenedesmus sp. AS-F-7-1 plastid partial 23S rRNA gene, strain AS-F-7-1 blastn 35331 263 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. AS-F-7-1
1027921 1027921 PRJNA1120203_P_NODE_53221_length_309_cov_44.550847_g52205_i0 PRJNA1120203 53221 309 44.550847 137.66211723 Choricystis 41299 Plants Plants 279 1.22e-70   NTclustered gi|1557934490|gb|MK397008.1| 2506529 g52205 i0 100 75.210355987055 151 0 95 0 2 152 120 270 Choricystis sp. ACT 0605 small subunit ribosomal RNA gene, partial sequence; chloroplast blastn 23240 279 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Choricystis Choricystis sp. ACT 0605
1549377 1549377 PRJNA1120203_P_NODE_38062_length_371_cov_145.627517_g37047_i0 PRJNA1120203 38062 371 145.627517 540.27808807 Scourfieldia sp. M561 163105 Plants Plants 606 6e-169   NTclustered gi|17028307|gb|L42854.1|SFCCPRGOL 163105 g37047 i0 96.739 106.870619946092 368 3 99 1 3 370 1998 2356 Scourfieldia sp. M561 large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product blastn 39649 606 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae Scourfieldiales Scourfieldiaceae Scourfieldia Scourfieldia sp. M561
2303095 2303095 PRJNA1120203_P_NODE_40882_length_356_cov_28.618375_g39867_i0 PRJNA1120203 40882 356 28.618375 101.881415 Tetraselmis 3164 Plants Plants 353 8.25e-93   NTclustered gi|290770765|emb|FN563077.1| 3165 g39867 i0 100 111.556179775281 191 0 96 0 154 344 3939 4129 Tetraselmis striata plastid 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), strain SAG 41.85 blastn 39714 353 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis striata
4855809 4855809 PRJNA1120203_P_NODE_47624_length_327_cov_29.460630_g46608_i0 PRJNA1120203 47624 327 29.46063 96.3362601 Scenedesmaceae 3086 Plants Plants 331 3.53e-86   NTclustered gi|1240946771|gb|KX756229.1| 3088 g46608 i0 100 114.107033639144 179 0 93 0 3 181 83678 83856 Tetradesmus obliquus chloroplast, complete genome blastn 37313 331 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
6130565 6130565 PRJNA1120203_P_NODE_32285_length_411_cov_533.627389_g31270_i0 PRJNA1120203 32285 411 533.627389 2193.20856879 Micractinium 126838 Plants Plants 739 0   NTclustered gi|1834332191|gb|MN894287.1| 2607981 g31270 i0 99.267 95.5936739659367 409 3 99 0 1 409 122022 122430 Micractinium singularis strain MM0003 plastid, complete genome blastn 39289 745 0.991946308724832 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium singularis
6652897 6652897 PRJNA1120203_P_NODE_54946_length_304_cov_9.987013_g53930_i0 PRJNA1120203 54946 304 9.987013 30.36051952 Choricystis parasitica 41300 Plants Plants 255 2.01e-63   NTclustered gi|723446927|ref|NC_025539.1| 41300 g53930 i0 97.333 85.6644736842105 150 4 95 0 153 302 2325 2176 Choricystis parasitica culture-collection SAG:17.98 chloroplast, complete genome blastn 26042 255 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Choricystis Choricystis parasitica
8680902 8680902 PRJNA1120203_P_NODE_31027_length_422_cov_41.796562_g30012_i0 PRJNA1120203 31027 422 41.796562 176.38149164 Trebouxiophyceae 75966 Plants Plants 719 0   NTclustered gi|1591446692|gb|MK005110.1| 2501437 g30012 i0 98.762 118.130331753555 404 5 96 0 17 420 405 2 Apatococcus sp. S3F4-61 23S ribosomal RNA gene, partial sequence; chloroplast blastn 49851 719 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Apatococcus Apatococcus sp. S3F4-61
9202657 9202657 PRJNA1120203_P_NODE_31028_length_422_cov_11.991404_g30013_i0 PRJNA1120203 31028 422 11.991404 50.60372488 Parietochloris pseudoalveolaris 3102 Plants Plants 667 0   NTclustered gi|725650801|ref|NC_025532.1| 3102 g30013 i0 96.088 104.609004739336 409 16 97 0 3 411 121257 121665 Ettlia pseudoalveolaris culture-collection UTEX:975 chloroplast, complete genome blastn 44145 667 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Parietochloris Parietochloris pseudoalveolaris
10478400 10478400 PRJNA1120203_P_NODE_31029_length_422_cov_11.532951_g30014_i0 PRJNA1120203 31029 422 11.532951 48.66905322 Stichococcus bacillaris 37433 Plants Plants 612 1.4899999999999999e-170   NTclustered gi|371782130|emb|HE610162.1| 37433 g30014 i0 93.659 94.3981042654028 410 24 97 2 12 420 2083 1675 Stichococcus bacillaris plastid partial 23S rRNA gene, strain SAG 379-2 blastn 39836 612 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
11230980 11230980 PRJNA1120203_P_NODE_30109_length_430_cov_27.184874_g29094_i0 PRJNA1120203 30109 430 27.184874 116.8949582 root 1 Root_unresolved Root_unresolved 414 4.59e-111   NTclustered gi|45385169|gb|AY553213.1| 3075 g29094 i0 98.712 86.9418604651163 233 3 94 0 15 247 713 945 Auxenochlorella protothecoides 16S small subunit ribosomal RNA gene, partial sequence; chloroplast blastn 37385 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
11231181 11231181 PRJNA1120203_P_NODE_52269_length_312_cov_38.786611_g51253_i0 PRJNA1120203 52269 312 38.786611 121.01422632 Chlamydomonadaceae 3051 Plants Plants 298 3.39e-76   NTclustered gi|397087|emb|X68892.1| 28456 g51253 i0 100 116.067307692308 161 0 96 0 150 310 282 122 Chloroplast Chlamydomonas geitleri rrnL gene, exon 2 blastn 36213 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas noctigama
11753221 11753221 PRJNA1120203_P_NODE_30790_length_424_cov_111.985755_g29775_i0 PRJNA1120203 30790 424 111.985755 474.8196012 Sarcinofilum mucosum 141643 Plants Plants 691 0   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g29775 i0 97.073 104.191037735849 410 12 97 0 13 422 145399 145808 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 44177 691 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
11753545 11753545 PRJNA1120203_P_NODE_55270_length_303_cov_10.373913_g54254_i0 PRJNA1120203 55270 303 10.373913 31.43295639 Auxenochlorella protothecoides 3075 Plants Plants 279 1.19e-70   NTclustered gi|570364818|gb|KC843975.1| 3075 g54254 i0 99.351 82.6204620462046 154 1 95 0 3 156 36816 36663 Auxenochlorella protothecoides chloroplast, complete genome blastn 25034 279 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
12506654 12506654 PRJNA1120203_P_NODE_48930_length_323_cov_2.168000_g47914_i0 PRJNA1120203 48930 323 2.168 7.00264 Bryopsis 3128 Plants Plants 172 2.23e-38   NTclustered gi|969822372|gb|KT950953.1| 3129 g47914 i0 87.838 44.4241486068111 148 16 46 2 175 321 415 561 Bryopsis maxima actin gene, partial cds blastn 14349 172 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis maxima
13781041 13781041 PRJNA1120203_P_NODE_41471_length_353_cov_46.371429_g40456_i0 PRJNA1120203 41471 353 46.371429 163.69114437 Tetraselmis 3164 Plants Plants 351 2.94e-92   NTclustered gi|290770765|emb|FN563077.1| 3165 g40456 i0 99.482 107.674220963173 193 1 96 0 149 341 3937 4129 Tetraselmis striata plastid 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), strain SAG 41.85 blastn 38009 351 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis striata
13781105 13781105 PRJNA1120203_P_NODE_48791_length_323_cov_12.880000_g47775_i0 PRJNA1120203 48791 323 12.88 41.6024 root 1 Root_unresolved Root_unresolved 281 3.55e-71   NTclustered gi|1557934492|gb|MK397010.1| 76111 g47775 i0 100 78.6439628482972 152 0 82 0 3 154 156 307 Nannochloris bacillaris isolate ACT 1015 small subunit ribosomal RNA gene, partial sequence; chloroplast blastn 25402 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris bacillaris
13781173 13781173 PRJNA1120203_P_NODE_55271_length_303_cov_9.791304_g54255_i0 PRJNA1120203 55271 303 9.791304 29.66765112 Ulotrichales 31306 Plants Plants 263 1.2e-65   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g54255 i0 98.013 83.7953795379538 151 3 95 0 151 301 145658 145808 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 25390 263 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
17605332 17605332 PRJNA1120203_P_NODE_32514_length_409_cov_12.461310_g31499_i0 PRJNA1120203 32514 409 12.46131 50.9667579 root 1 Root_unresolved Root_unresolved 414 4.35e-111   NTclustered gi|45385169|gb|AY553213.1| 3075 g31499 i0 98.712 86.5647921760391 233 3 94 0 163 395 945 713 Auxenochlorella protothecoides 16S small subunit ribosomal RNA gene, partial sequence; chloroplast blastn 35405 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
18126618 18126618 PRJNA1120203_P_NODE_45015_length_337_cov_9.238636_g44000_i0 PRJNA1120203 45015 337 9.238636 31.13420332 uncultured Choricystis 858337 Plants Plants 285 2.88e-72   NTclustered gi|1450640821|gb|MH591948.1| 858337 g44000 i0 99.363 77.8753709198813 157 1 96 0 13 169 27599 27443 Uncultured Choricystis plastid blastn 26244 285 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Choricystis
20154042 20154042 PRJNA1120203_P_NODE_26956_length_464_cov_74.907928_g25942_i0 PRJNA1120203 26956 464 74.907928 347.57278592 root 1 Root_unresolved Root_unresolved 804 0   NTclustered gi|1008861523|ref|NC_029671.1| 31300 g25942 i0 99.105 111.040948275862 447 4 96 0 16 462 4194 4640 Mychonastes homosphaera strain CAUP H6502 chloroplast, complete genome blastn 51523 804 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Mychonastaceae Mychonastes Mychonastes homosphaera
20154222 20154222 PRJNA1120203_P_NODE_45976_length_333_cov_3.915385_g44961_i0 PRJNA1120203 45976 333 3.915385 13.03823205 root 1 Root_unresolved Root_unresolved 281 3.68e-71   NTclustered gi|2386955046|ref|NC_068582.1| 55409 g44961 i0 99.355 90.3783783783784 155 1 90 0 3 157 86538 86692 Coelastrum microporum chloroplast, complete genome blastn 30096 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrum Coelastrum microporum
21429681 21429681 PRJNA1120203_P_NODE_33837_length_399_cov_12.573620_g32822_i0 PRJNA1120203 33837 399 12.57362 50.1687438 root 1 Root_unresolved Root_unresolved 414 4.23e-111   NTclustered gi|45385169|gb|AY553213.1| 3075 g32822 i0 98.712 87.4135338345865 233 3 94 0 15 247 713 945 Auxenochlorella protothecoides 16S small subunit ribosomal RNA gene, partial sequence; chloroplast blastn 34878 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
21429855 21429855 PRJNA1120203_P_NODE_52577_length_311_cov_5.289916_g51561_i0 PRJNA1120203 52577 311 5.289916 16.45163876 root 1 Root_unresolved Root_unresolved 281 3.41e-71   NTclustered gi|2386955046|ref|NC_068582.1| 55409 g51561 i0 99.355 65.6012861736334 155 1 50 0 3 157 86538 86692 Coelastrum microporum chloroplast, complete genome blastn 20402 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrum Coelastrum microporum
22704750 22704750 PRJNA1120203_P_NODE_47338_length_328_cov_14.074510_g46322_i0 PRJNA1120203 47338 328 14.07451 46.1643928 root 1 Root_unresolved Root_unresolved 281 3.61e-71   NTclustered gi|1557934492|gb|MK397010.1| 76111 g46322 i0 100 46.2530487804878 152 0 46 0 175 326 307 156 Nannochloris bacillaris isolate ACT 1015 small subunit ribosomal RNA gene, partial sequence; chloroplast blastn 15171 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris bacillaris
23227334 23227334 PRJNA1120203_P_NODE_57019_length_298_cov_6.120000_g56003_i0 PRJNA1120203 57019 298 6.12 18.2376 Microthamnion kuetzingianum 34148 Plants Plants 272 1.9499999999999993e-68   NTclustered gi|18654362|gb|L49153.1|MIXCPRGOL 34148 g56003 i0 99.333 80.1812080536913 150 1 95 0 3 152 2052 2201 Microthamnion kuetzingianum large subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product blastn 23894 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Microthamniales Microthamniaceae Microthamnion Microthamnion kuetzingianum
24500665 24500665 PRJNA1120203_P_NODE_30680_length_425_cov_614.548295_g29665_i0 PRJNA1120203 30680 425 614.548295 2611.83025375 Mychonastes homosphaera 31300 Plants Plants 752 0   NTclustered gi|1008861523|ref|NC_029671.1| 31300 g29665 i0 99.516 132.710588235294 413 2 97 0 11 423 664 1076 Mychonastes homosphaera strain CAUP H6502 chloroplast, complete genome blastn 56402 752 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Mychonastaceae Mychonastes Mychonastes homosphaera
24500872 24500872 PRJNA1120203_P_NODE_47880_length_326_cov_51.328063_g46864_i0 PRJNA1120203 47880 326 51.328063 167.32948538 Marvania geminata 97105 Plants Plants 285 2.78e-72   NTclustered gi|723457130|ref|NC_025549.1| 97105 g46864 i0 100 73.1840490797546 154 0 90 0 171 324 5124 4971 Marvania geminata culture-collection SAG:12.88 chloroplast, complete genome blastn 23858 285 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Marvania Marvania geminata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;