RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1120203" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA1120203 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11230990 11230990 PRJNA1120203_P_NODE_31589_length_417_cov_3.497093_g30574_i0 PRJNA1120203 31589 417 3.497093 14.58287781 root 1 Root_unresolved Root_unresolved 555 2.51e-153   NTclustered gi|523420608|ref|NC_016703.2| 33657 g30574 i0 91.542 104.280575539568 402 34 96 0 3 404 42183 42584 Phaeocystis antarctica strain CCMP1374 plastid, complete genome blastn 43485 555 1 Eukaryota Haptista   Haptophyta   Phaeocystales Phaeocystaceae Phaeocystis Phaeocystis antarctica
16330404 16330404 PRJNA1120203_P_NODE_59513_length_291_cov_53.077982_g58497_i0 PRJNA1120203 59513 291 53.077982 154.45692762 root 1 Root_unresolved Root_unresolved 250 8.909999999999999e-62   NTclustered gi|2059554210|gb|MZ469751.1| 40639 g58497 i0 99.275 95.766323024055 138 1 94 0 141 278 269 406 Isochrysis sp. strain DAD-ALGEUK-23 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 27868 252 0.992063492063492 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Isochrysis Isochrysis sp.
17605343 17605343 PRJNA1120203_P_NODE_33714_length_400_cov_27.611621_g32699_i0 PRJNA1120203 33714 400 27.611621 110.446484 Pavlovaceae 418969 Haptophyta other_Eukaryota 396 1.5399999999999995e-105   NTclustered gi|456061976|ref|NC_020371.1| 2081491 g32699 i0 98.23 94.8525 226 4 94 0 163 388 2235 2460 Pavlova lutheri chloroplast, complete genome blastn 37941 396 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri
20154316 20154316 PRJNA1120203_P_NODE_55636_length_302_cov_71.078603_g54620_i0 PRJNA1120203 55636 302 71.078603 214.65738106 root 1 Root_unresolved Root_unresolved 250 9.29e-62   NTclustered gi|2059554210|gb|MZ469751.1| 40639 g54620 i0 99.275 90.5066225165563 138 1 46 0 152 289 269 406 Isochrysis sp. strain DAD-ALGEUK-23 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 27333 252 0.992063492063492 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Isochrysis Isochrysis sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;