RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1120060" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120060 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2301576 2301576 PRJNA1120060_P_NODE_2534742_length_253_cov_0.866667_g2516670_i0 PRJNA1120060 2534742 253 0.866667 2.19266751 Pseudomonadati 3379134 Bacteria Bacteria 213 9.95e-51   NTclustered gi|2874254019|emb|OY970344.1| 412056 g2516670 i0 81.961 62.6166007905138 255 42 100 3 1 253 3198910 3199162 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 15842 213 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
9183265 9183265 PRJNA1120060_P_NODE_2762948_length_247_cov_0.896552_g2744864_i0 PRJNA1120060 2762948 247 0.896552 2.21448344 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 183 7.59e-42   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g2744864 i0 80.833 1.97570850202429 240 41 96 3 1 236 3999372 3999134 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 488 183 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
14270132 14270132 PRJNA1120060_P_NODE_1662172_length_286_cov_4.178404_g1644171_i0 PRJNA1120060 1662172 286 4.178404 11.95023544 Akkermansia muciniphila 239935 Bacteria Bacteria 52.8 0.026   NTclustered gi|2756360508|gb|CP156688.1| 239935 g1644171 i0 100 0.0979020979020979 28 0 10 0 179 206 3031329 3031302 Akkermansia muciniphila strain AKK-TMU chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
14275031 14275031 PRJNA1120060_P_NODE_2018412_length_272_cov_1.537688_g2000379_i0 PRJNA1120060 2018412 272 1.537688 4.18251136 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 230 1.0699999999999995e-55   NTclustered gi|2874253974|emb|OY970299.1| 412056 g2000379 i0 85.455 59.8602941176471 220 32 81 0 6 225 2336692 2336473 MAG: uncultured Verrucomicrobiae bacterium isolate MFD09603.bin.1.43 genome assembly, chromosome: 1 blastn 16282 230 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
18120608 18120608 PRJNA1120060_P_NODE_621615_length_345_cov_2.518382_g603863_i0 PRJNA1120060 621615 345 2.518382 8.6884179 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 52.8 0.033   NTclustered gi|2874254096|emb|OY970179.1| 412056 g603863 i0 100 0.0811594202898551 28 0 8 0 229 256 800753 800780 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
24486613 24486613 PRJNA1120060_P_NODE_3215960_length_230_cov_6.573248_g3197853_i0 PRJNA1120060 3215960 230 6.573248 15.1184704 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 272 1.4499999999999998e-68   NTclustered gi|2874253974|emb|OY970299.1| 412056 g3197853 i0 88.444 79.0565217391304 225 26 98 0 6 230 2530581 2530805 MAG: uncultured Verrucomicrobiae bacterium isolate MFD09603.bin.1.43 genome assembly, chromosome: 1 blastn 18183 272 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;