RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1120060" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120060 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10477886 10477886 PRJNA1120060_P_NODE_984309_length_312_cov_2.732218_g966380_i0 PRJNA1120060 984309 312 2.732218 8.52452016 Acetomicrobium mobile 97477 Bacteria Bacteria 52.8 0.029   NTclustered gi|390619527|gb|CP003198.1| 891968 g966380 i0 100 0.0897435897435897 28 0 9 0 186 213 2626 2599 Acetomicrobium mobile DSM 13181 chromosome, complete genome blastn 28 52.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Acetomicrobiaceae Acetomicrobium Acetomicrobium mobile
16840022 16840022 PRJNA1120060_P_NODE_3421794_length_214_cov_4.531915_g3403672_i0 PRJNA1120060 3421794 214 4.531915 9.6982981 Fretibacterium fastidiosum 651822 Bacteria Bacteria 396 7.559999999999996e-106   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g3403672 i0 100 2.23364485981308 214 0 100 0 1 214 2508009 2508222 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 478 396 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;