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contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA1120060" and tax_phylum = "Rhodophyta"

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tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 23 ✖

bioproject 1

  • PRJNA1120060 · 23 ✖

analysis 1

  • blastn · 23 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
240198 240198 PRJNA1120060_P_NODE_1600141_length_289_cov_1.879630_g1582148_i0 PRJNA1120060 1600141 289 1.87963 5.4321307 Coeloseira compressa 1852973 Rhodophyta other_Eukaryota 52.8 0.027   NTclustered gi|1037241293|ref|NC_030338.1| 1852973 g1582148 i0 100 0.0968858131487889 28 0 10 0 73 100 55357 55384 Coeloseira compressa plastid, complete genome blastn 28 52.8 1 Eukaryota     Rhodophyta Florideophyceae Rhodymeniales Champiaceae Coeloseira Coeloseira compressa
246220 246220 PRJNA1120060_P_NODE_2039761_length_271_cov_1.969697_g2021724_i0 PRJNA1120060 2039761 271 1.969697 5.33787887 Asparagopsis taxiformis 260499 Rhodophyta other_Eukaryota 54.7 0.007   NTclustered gi|1070108057|ref|NC_031148.1| 260499 g2021724 i0 96.97 0.121771217712177 33 0 12 1 231 262 31579 31547 Asparagopsis taxiformis plastid, complete genome blastn 33 54.7 1 Eukaryota     Rhodophyta Florideophyceae Bonnemaisoniales Bonnemaisoniaceae Asparagopsis Asparagopsis taxiformis
1526277 1526277 PRJNA1120060_P_NODE_2440502_length_256_cov_1.595628_g2422433_i0 PRJNA1120060 2440502 256 1.595628 4.08480768 Pyropia kuniedae 683349 Rhodophyta other_Eukaryota 60.2 1.39e-4   NTclustered gi|378786326|dbj|AB525396.1| 683349 g2422433 i0 97.222 0.140625 36 0 14 1 91 125 167 202 Porphyra kuniedae mitochondrial trnC(gca), rps11, sdh3, trnG(gcc), trnN(guu), trnP(ugg), rns genes for tRNA-Cys, ribosomal protein S11, succinate:cytochrome c oxidoreductase subunit 3, tRNA-Gly, tRNA-Asn, tRNA-Pro, small subunit ribosomal RNA, partial and complete cds, partial and complete sequence blastn 36 60.2 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia kuniedae
2806216 2806216 PRJNA1120060_P_NODE_2778003_length_246_cov_3.988439_g2759917_i0 PRJNA1120060 2778003 246 3.988439 9.81155994 Rhodella violacea 2801 Rhodophyta other_Eukaryota 52.8 0.022   NTclustered gi|2222300232|ref|NC_062301.1| 2801 g2759917 i0 100 0.113821138211382 28 0 11 0 152 179 354073 354046 Rhodella violacea strain SAG 115.79 chloroplast, complete genome blastn 28 52.8 1 Eukaryota     Rhodophyta Rhodellophyceae Rhodellales Rhodellaceae Rhodella Rhodella violacea
6637445 6637445 PRJNA1120060_P_NODE_3121906_length_235_cov_2.512346_g3103804_i0 PRJNA1120060 3121906 235 2.512346 5.9040131 Gracilariopsis heteroclada 172978 Rhodophyta other_Eukaryota 56.5 0.002   NTclustered gi|1436051580|ref|NC_038100.1| 172978 g3103804 i0 100 0.127659574468085 30 0 13 0 70 99 127951 127922 Gracilariopsis heteroclada chloroplast, complete genome blastn 30 56.5 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilariopsis Gracilariopsis heteroclada
10437302 10437302 PRJNA1120060_P_NODE_1163809_length_311_cov_1.823529_g1145874_i0 PRJNA1120060 1163809 311 1.823529 5.67117519 Bostrychia tenuissima 196631 Rhodophyta other_Eukaryota 62.1 4.83e-5   NTclustered gi|2666692823|ref|NC_085549.1| 196631 g1145874 i0 95 6.27331189710611 40 0 13 2 254 293 16980 17017 Bostrychia tenuissima strain MABIK-LAS-00000110 mitochondrion, complete genome blastn 1951 62.1 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Bostrychia Bostrychia tenuissima
10437411 10437411 PRJNA1120060_P_NODE_1170269_length_310_cov_6.257384_g1152329_i0 PRJNA1120060 1170269 310 6.257384 19.3978904 Compsopogon caeruleus 31354 Rhodophyta other_Eukaryota 54.7 0.008   NTclustered gi|1215848283|ref|NC_035350.1| 31354 g1152329 i0 96.97 0.106451612903226 33 0 11 1 230 262 152689 152658 Compsopogon caeruleus chloroplast, complete genome blastn 33 54.7 1 Eukaryota     Rhodophyta Compsopogonophyceae Compsopogonales Compsopogonaceae Compsopogon Compsopogon caeruleus
10475630 10475630 PRJNA1120060_P_NODE_845069_length_315_cov_1.987603_g827152_i0 PRJNA1120060 845069 315 1.987603 6.26094945 Choreocolax polysiphoniae 282351 Rhodophyta other_Eukaryota 60.2 1.76e-4   NTclustered gi|788512200|ref|NC_026522.1| 282351 g827152 i0 91.304 0.146031746031746 46 1 14 2 1 43 69522 69477 Choreocolax polysiphoniae plastid, complete genome blastn 46 60.2 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Choreocolacaceae Choreocolax Choreocolax polysiphoniae
11720200 11720200 PRJNA1120060_P_NODE_1698630_length_285_cov_1.735849_g1680626_i0 PRJNA1120060 1698630 285 1.735849 4.94716965 Echinothamnion hookeri 2008680 Rhodophyta other_Eukaryota 60.2 1.57e-4   NTclustered gi|2519762028|ref|NC_079646.1| 2008680 g1680626 i0 100 0.221052631578947 32 0 11 0 11 42 147687 147718 Echinothamnion hookeri voucher PD3303 chloroplast, complete genome blastn 63 60.2 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Echinothamnion Echinothamnion hookeri
12504560 12504560 PRJNA1120060_P_NODE_1739770_length_283_cov_2.680952_g1721762_i0 PRJNA1120060 1739770 283 2.680952 7.58709416 Gracilaria 2774 Rhodophyta other_Eukaryota 52.8 0.026   NTclustered gi|2127868550|ref|NC_058675.1| 172960 g1721762 i0 96.875 0.339222614840989 32 0 11 1 67 98 6493 6463 Gracilaria cervicornis voucher ALCB65155 mitochondrion, complete genome blastn 96 52.8 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilaria Gracilaria cervicornis
12505968 12505968 PRJNA1120060_P_NODE_596810_length_349_cov_2.561594_g579084_i0 PRJNA1120060 596810 349 2.561594 8.93996306 Corallina 35169 Rhodophyta other_Eukaryota 56.5 0.003   NTclustered gi|1835927919|gb|MT211885.1| 35170 g579084 i0 100 0.515759312320917 30 0 9 0 50 79 163876 163847 Corallina officinalis chloroplast, complete genome blastn 180 56.5 1 Eukaryota     Rhodophyta Florideophyceae Corallinales Corallinaceae Corallina Corallina officinalis
15557754 15557754 PRJNA1120060_P_NODE_2722553_length_248_cov_0.891429_g2704470_i0 PRJNA1120060 2722553 248 0.891429 2.21074392 Choreocolax polysiphoniae 282351 Rhodophyta other_Eukaryota 52.8 0.022   NTclustered gi|788512200|ref|NC_026522.1| 282351 g2704470 i0 90.476 0.169354838709677 42 1 17 2 184 225 50713 50751 Choreocolax polysiphoniae plastid, complete genome blastn 42 52.8 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Choreocolacaceae Choreocolax Choreocolax polysiphoniae
16814584 16814584 PRJNA1120060_P_NODE_1407734_length_297_cov_4.433036_g1389752_i0 PRJNA1120060 1407734 297 4.433036 13.16611692 Bangia atropurpurea 31347 Rhodophyta other_Eukaryota 52.8 0.028   NTclustered gi|2222305355|ref|NC_062392.1| 31347 g1389752 i0 100 0.0942760942760943 28 0 9 0 190 217 164380 164407 Bangia atropurpurea strain SAG 1351-1 chloroplast, complete genome blastn 28 52.8 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Bangia Bangia atropurpurea
18092250 18092250 PRJNA1120060_P_NODE_1627995_length_288_cov_1.493023_g1609998_i0 PRJNA1120060 1627995 288 1.493023 4.29990624 Lemanea occidentalis 2861711 Rhodophyta other_Eukaryota 52.8 0.027   NTclustered gi|2916204181|gb|PV153509.1| 2861711 g1609998 i0 100 0.0972222222222222 28 0 10 0 121 148 17922 17895 Lemanea occidentalis voucher BHO A-1233 mitochondrion, complete genome blastn 28 52.8 1 Eukaryota     Rhodophyta Florideophyceae Batrachospermales Lemaneaceae Lemanea Lemanea occidentalis
19378309 19378309 PRJNA1120060_P_NODE_2499436_length_254_cov_1.353591_g2481365_i0 PRJNA1120060 2499436 254 1.353591 3.43812114 Gracilaria ornata 172946 Rhodophyta other_Eukaryota 52.8 0.023   NTclustered gi|2127868732|ref|NC_058682.1| 172946 g2481365 i0 100 0.110236220472441 28 0 11 0 150 177 5586 5613 Gracilaria ornata voucher ALCB99680 mitochondrion, complete genome blastn 28 52.8 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilaria Gracilaria ornata
19399143 19399143 PRJNA1120060_P_NODE_927716_length_312_cov_3.564854_g909787_i0 PRJNA1120060 927716 312 3.564854 11.12234448 Cyanidium caldarium 2771 Rhodophyta other_Eukaryota 58.4 6.27e-4   NTclustered gi|7799050|emb|AJ277169.1| 2771 g909787 i0 75.862 0.532051282051282 116 27 37 1 162 276 387 502 Galdieria sulphuraria mRNA for ubiquitin, subunits I and II (polyubiquitin gene) blastn 166 58.4 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidium Cyanidium caldarium
20675354 20675354 PRJNA1120060_P_NODE_970397_length_312_cov_2.891213_g952468_i0 PRJNA1120060 970397 312 2.891213 9.02058456 Galdieria sulphuraria 130081 Rhodophyta other_Eukaryota 54.7 0.008   NTclustered gi|545708272|ref|XM_005706392.1| 130081 g952468 i0 100 0.092948717948718 29 0 9 0 167 195 2164 2192 Galdieria sulphuraria 5' nucleotidase family protein (Gasu_27140), mRNA blastn 29 54.7 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria sulphuraria
21908936 21908936 PRJNA1120060_P_NODE_1049038_length_311_cov_4.525210_g1031103_i0 PRJNA1120060 1049038 311 4.52521 14.0734031 Chroothece richteriana 101928 Root_unresolved Root_unresolved 52.8 0.029   NTclustered gi|2222323044|ref|NC_062379.1| 101928 g1031103 i0 100 0.090032154340836 28 0 9 0 106 133 194809 194782 Chroothece richteriana strain SAG 104.79 chloroplast, complete genome blastn 28 52.8 1 Eukaryota     Rhodophyta Stylonematophyceae Stylonematales Stylonemataceae Chroothece Chroothece richteriana
21917711 21917711 PRJNA1120060_P_NODE_1645658_length_287_cov_2.336449_g1627660_i0 PRJNA1120060 1645658 287 2.336449 6.70560863 Compsopogon caeruleus 31354 Rhodophyta other_Eukaryota 54.7 0.007   NTclustered gi|1215848283|ref|NC_035350.1| 31354 g1627660 i0 96.97 0.114982578397213 33 0 11 1 204 236 152689 152658 Compsopogon caeruleus chloroplast, complete genome blastn 33 54.7 1 Eukaryota     Rhodophyta Compsopogonophyceae Compsopogonales Compsopogonaceae Compsopogon Compsopogon caeruleus
21928933 21928933 PRJNA1120060_P_NODE_2485618_length_254_cov_2.850829_g2467547_i0 PRJNA1120060 2485618 254 2.850829 7.24110566 Grateloupia asiatica 151735 Rhodophyta other_Eukaryota 52.8 0.023   NTclustered gi|1824615466|dbj|AP018129.2| 151735 g2467547 i0 100 0.110236220472441 28 0 11 0 181 208 184433 184406 Grateloupia asiatica chloroplast DNA, nearly complete genome blastn 28 52.8 1 Eukaryota     Rhodophyta Florideophyceae Halymeniales Halymeniaceae Grateloupia Grateloupia asiatica
23188279 23188279 PRJNA1120060_P_NODE_1308839_length_306_cov_1.600858_g1290887_i0 PRJNA1120060 1308839 306 1.600858 4.89862548 Ceramothamnion japonicum 218448 Rhodophyta other_Eukaryota 52.8 0.029   NTclustered gi|1070110402|ref|NC_031174.1| 218448 g1290887 i0 100 0.0915032679738562 28 0 9 0 209 236 122637 122664 Ceramium japonicum plastid, complete genome blastn 28 52.8 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Ceramiaceae Ceramothamnion Ceramothamnion japonicum
23197048 23197048 PRJNA1120060_P_NODE_1926099_length_275_cov_8.099010_g1908075_i0 PRJNA1120060 1926099 275 8.09901 22.2722775 Gelidium vagum 35171 Rhodophyta other_Eukaryota 52.8 0.025   NTclustered gi|1016880742|ref|NC_029859.1| 35171 g1908075 i0 100 0.101818181818182 28 0 10 0 68 95 109534 109561 Gelidium vagum plastid, complete genome blastn 28 52.8 1 Eukaryota     Rhodophyta Florideophyceae Gelidiales Gelidiaceae Gelidium Gelidium vagum
23200061 23200061 PRJNA1120060_P_NODE_2146739_length_267_cov_1.515464_g2128693_i0 PRJNA1120060 2146739 267 1.515464 4.04628888 Peyssonnelia rubra 389204 Rhodophyta other_Eukaryota 54.7 0.007   NTclustered gi|1358962767|gb|MG030787.1| 389204 g2128693 i0 94.444 3.02621722846442 36 0 13 2 87 120 234 269 Peyssonnelia rubra voucher RM0052 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial blastn 808 54.7 1 Eukaryota     Rhodophyta Florideophyceae Peyssonneliales Peyssonneliaceae Peyssonnelia Peyssonnelia rubra

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;