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contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA1120060" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 20 ✖

tax_clade 1

bioproject 1

  • PRJNA1120060 · 20 ✖

analysis 1

  • blastn · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1027361 1027361 PRJNA1120060_P_NODE_82681_length_604_cov_2.207156_g68983_i0 PRJNA1120060 82681 604 2.207156 13.33122224 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 73.1 4.59e-8   NTclustered gi|325193776|emb|FR824800.1| 890382 g68983 i0 95.556 3.42880794701987 45 2 7 0 57 101 50 6 Albugo laibachii Nc14, genomic contig CONTIG_936_NC14_v4_4597_652 blastn 2071 73.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
1510610 1510610 PRJNA1120060_P_NODE_1302282_length_306_cov_3.982833_g1284330_i0 PRJNA1120060 1302282 306 3.982833 12.18746898 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.008   NTclustered gi|695443287|ref|XM_009535371.1| 67593 g1284330 i0 96.875 0.209150326797386 32 1 10 0 274 305 2372 2341 Phytophthora sojae hypothetical protein partial mRNA blastn 64 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
1528721 1528721 PRJNA1120060_P_NODE_2645862_length_250_cov_0.875706_g2627782_i0 PRJNA1120060 2645862 250 0.875706 2.189265 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|698791601|ref|XM_009830531.1| 112090 g2627782 i0 100 0.112 28 0 11 0 23 50 1332 1359 Aphanomyces astaci hypothetical protein mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
1529796 1529796 PRJNA1120060_P_NODE_2738442_length_247_cov_3.522989_g2720358_i0 PRJNA1120060 2738442 247 3.522989 8.70178283 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|325195054|emb|FR825849.1| 890382 g2720358 i0 100 0.11336032388664 28 0 11 0 123 150 6 33 Albugo laibachii Nc14, genomic contig CONTIG_2887_NC14_v4_540_6548 blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
2813379 2813379 PRJNA1120060_P_NODE_3412503_length_215_cov_4.345070_g3394383_i0 PRJNA1120060 3412503 215 4.34507 9.3419005 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 178 2.9999999999999998e-40   NTclustered gi|673019533|ref|XM_008865506.1| 157072 g3394383 i0 88 66.5162790697674 150 18 70 0 1 150 255 106 Aphanomyces invadans hypothetical protein mRNA blastn 14301 178 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
4854373 4854373 PRJNA1120060_P_NODE_278984_length_427_cov_7.519774_g261982_i0 PRJNA1120060 278984 427 7.519774 32.10943498 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 207 8.3e-49   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g261982 i0 79.661 17.7236533957845 295 55 69 5 123 415 482 191 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 7568 207 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
5357182 5357182 PRJNA1120060_P_NODE_2628105_length_250_cov_1.988701_g2610025_i0 PRJNA1120060 2628105 250 1.988701 4.9717525 Phytophthora kernoviae 325452 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|2248513156|ref|NC_063798.1| 325452 g2610025 i0 100 0.24 30 0 12 0 216 245 26823 26852 Phytophthora kernoviae isolate 00844/4 mitochondrion, complete genome blastn 60 56.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora kernoviae
10437125 10437125 PRJNA1120060_P_NODE_1150889_length_311_cov_2.378151_g1132954_i0 PRJNA1120060 1150889 311 2.378151 7.39604961 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.029   NTclustered gi|669170658|ref|XM_008622456.1| 1156394 g1132954 i0 100 0.090032154340836 28 0 9 0 50 77 97 124 Saprolegnia diclina VS20 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
10442983 10442983 PRJNA1120060_P_NODE_1554549_length_291_cov_1.568807_g1536558_i0 PRJNA1120060 1554549 291 1.568807 4.56522837 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.027   NTclustered gi|675184826|ref|XM_008903050.1| 761204 g1536558 i0 100 0.0962199312714777 28 0 10 0 157 184 60 33 Phytophthora parasitica INRA-310 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
10458826 10458826 PRJNA1120060_P_NODE_2762289_length_247_cov_0.896552_g2744205_i0 PRJNA1120060 2762289 247 0.896552 2.21448344 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 165 2.75e-36   NTclustered gi|2794878855|ref|XM_067888068.1| 164328 g2744205 i0 80.455 27.4574898785425 220 39 88 3 28 245 757 974 Phytophthora ramorum uncharacterized protein (KRP23_344), partial mRNA blastn 6782 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
11230180 11230180 PRJNA1120060_P_NODE_3467109_length_210_cov_4.043796_g3448984_i0 PRJNA1120060 3467109 210 4.043796 8.4919716 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 58.4 3.96e-4   NTclustered gi|813118109|ref|XM_012340462.1| 695850 g3448984 i0 100 0.295238095238095 31 0 15 0 180 210 1334 1304 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 62 58.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
13026208 13026208 PRJNA1120060_P_NODE_87851_length_592_cov_6.348748_g73896_i0 PRJNA1120060 87851 592 6.348748 37.58458816 Phytophthora aysenensis 2755056 SAR_Eukaryotes SAR_Eukaryotes 180 2.57e-40   NTclustered gi|1864205364|gb|MN557842.1| 2755056 g73896 i0 89.437 24.4966216216216 142 15 24 0 101 242 542 683 Phytophthora aysenensis voucher RGM 2753 ATP synthase protein 9 (atp9) gene, partial cds; and NADH dehydrogenase subunit 9 (nad9) gene, complete cds; mitochondrial blastn 14502 180 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora aysenensis
14265151 14265151 PRJNA1120060_P_NODE_1311392_length_305_cov_5.301724_g1293436_i0 PRJNA1120060 1311392 305 5.301724 16.1702582 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 207 5.7300000000000004e-49   NTclustered gi|59894163|gb|AY729864.1| 74557 g1293436 i0 80 45.144262295082 285 53 93 4 23 305 1307 1025 Thraustotheca clavata heat shock protein 90 gene, partial cds blastn 13769 207 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
14290318 14290318 PRJNA1120060_P_NODE_327872_length_409_cov_4.562500_g310656_i0 PRJNA1120060 327872 409 4.5625 18.660625 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 556 6.830000000000001e-154   NTclustered gi|325195136|emb|FR825930.1| 890382 g310656 i0 98.131 9.56968215158924 321 3 78 3 91 409 330 11 Albugo laibachii Nc14, genomic contig CONTIG_2990_NC14_v4_499_54 blastn 3914 556 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
16328969 16328969 PRJNA1120060_P_NODE_2988753_length_241_cov_3.916667_g2970656_i0 PRJNA1120060 2988753 241 3.916667 9.43916747 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 252 1.99e-62   NTclustered gi|2795048392|ref|XM_067931901.1| 4785 g2970656 i0 85.537 5.95020746887967 242 33 100 2 1 241 1605 1845 Phytophthora cinnamomi phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (IUM83_07589), partial mRNA blastn 1434 252 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
16834422 16834422 PRJNA1120060_P_NODE_2929114_length_243_cov_0.917647_g2911021_i0 PRJNA1120060 2929114 243 0.917647 2.22988221 Phytophthora celeris 3073758 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|2689406622|gb|OR549381.1| 3073758 g2911021 i0 100 0.806584362139918 28 0 12 0 181 208 900 927 Phytophthora celeris isolate SU1500 cytochrome oxidase subunit II (cox2) gene, partial cds; hypothetical protein (orf32) gene, complete cds; and cytochrome oxidase subunit I (cox1) gene, partial cds; mitochondrial blastn 196 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora celeris
16844863 16844863 PRJNA1120060_P_NODE_537954_length_359_cov_3.227273_g520296_i0 PRJNA1120060 537954 359 3.227273 11.58591007 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.034   NTclustered gi|2794726574|ref|XM_067962479.1| 4779 g520296 i0 100 0.155988857938719 28 0 8 0 171 198 81 54 Bremia lactucae uncharacterized protein (CCR75_004393), partial mRNA blastn 56 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
21946368 21946368 PRJNA1120060_P_NODE_679398_length_336_cov_3.418251_g661591_i0 PRJNA1120060 679398 336 3.418251 11.48532336 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.032   NTclustered gi|301106844|ref|XM_002902459.1| 403677 g661591 i0 100 0.0833333333333333 28 0 8 0 79 106 1777 1804 Phytophthora infestans T30-4 uncharacterized protein (PITG_09962), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
23184153 23184153 PRJNA1120060_P_NODE_1045799_length_311_cov_4.773109_g1027864_i0 PRJNA1120060 1045799 311 4.773109 14.84436899 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 243 1.61e-59   NTclustered gi|2289|emb|X59936.1| 4766 g1027864 i0 87.264 65.1832797427653 212 27 68 0 98 309 1 212 A.bisexualis gene for actin blastn 20272 243 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
23979231 23979231 PRJNA1120060_P_NODE_3567639_length_201_cov_5.601562_g3549512_i0 PRJNA1120060 3567639 201 5.601562 11.25913962 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 71.3 4.83e-8   NTclustered gi|325181596|emb|FR824063.1| 890382 g3549512 i0 95.455 6.29850746268657 44 2 22 0 72 115 182 225 Albugo laibachii Nc14, genomic contig CONTIG_18_NC14_v4_198151_220 blastn 1266 71.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;