RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1120060" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120060 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9202186 9202186 PRJNA1120060_P_NODE_986568_length_312_cov_2.707113_g968639_i0 PRJNA1120060 986568 312 2.707113 8.44619256 Fibrobacterota bacterium 2052160 Bacteria Bacteria 52.8 0.029   NTclustered gi|1958056460|gb|CP064986.1| 2052160 g968639 i0 100 0.0897435897435897 28 0 9 0 96 123 191355 191382 Fibrobacteres bacterium isolate Fred_18-Q3-R57-64_MAXAC.109_cln chromosome, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
19380764 19380764 PRJNA1120060_P_NODE_2706556_length_248_cov_2.234286_g2688473_i0 PRJNA1120060 2706556 248 2.234286 5.54102928 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 104 6.11e-18   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g2688473 i0 88.372 0.346774193548387 86 10 35 0 143 228 1225841 1225756 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 86 104 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;