RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1120060" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1120060 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4099947 4099947 PRJNA1120060_P_NODE_903924_length_312_cov_4.309623_g885995_i0 PRJNA1120060 903924 312 4.309623 13.44602376 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.008   NTclustered gi|470490156|ref|XM_004344911.1| 1257118 g885995 i0 100 0.092948717948718 29 0 9 0 37 65 3680 3652 Acanthamoeba castellanii str. Neff midasin family protein (ACA1_286600), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7887706 7887706 PRJNA1120060_P_NODE_1223307_length_310_cov_2.421941_g1205367_i0 PRJNA1120060 1223307 310 2.421941 7.5080171 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.029   NTclustered gi|470441883|ref|XM_004339418.1| 1257118 g1205367 i0 100 0.0903225806451613 28 0 9 0 261 288 706 733 Acanthamoeba castellanii str. Neff steroid isomerase (ACA1_061950), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10439640 10439640 PRJNA1120060_P_NODE_1318389_length_305_cov_1.698276_g1300432_i0 PRJNA1120060 1318389 305 1.698276 5.1797418 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 311 4.25e-80   NTclustered gi|470447963|ref|XM_004340066.1| 1257118 g1300432 i0 85.197 96.1573770491803 304 43 99 2 1 303 849 1151 Acanthamoeba castellanii str. Neff ATP synthase, putative (ACA1_367940), partial mRNA blastn 29328 311 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12994095 12994095 PRJNA1120060_P_NODE_1610091_length_288_cov_38.944186_g1592098_i0 PRJNA1120060 1610091 288 38.944186 112.15925568 Vannella simplex 197532 Discosea other_Eukaryota 481 2.869999999999999e-131   NTclustered gi|284192584|gb|GQ265382.1| 197532 g1592098 i0 97.203 98.75 286 4 99 2 3 288 399 680 Vannella simplex strain CCAP 1589/3 clone A134.3 18S ribosomal RNA gene, partial sequence blastn 28440 481 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
21921428 21921428 PRJNA1120060_P_NODE_1922618_length_276_cov_1.251232_g1904596_i0 PRJNA1120060 1922618 276 1.251232 3.45340032 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.025   NTclustered gi|470481104|ref|XM_004342495.1| 1257118 g1904596 i0 100 0.101449275362319 28 0 10 0 246 273 2333 2360 Acanthamoeba castellanii str. Neff proteasome activator subunit 4, putative (ACA1_185740), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;