RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1120060" and tax_phylum = "Ctenophora"

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tax_superkingdom 1

tax_phylum 1

  • Ctenophora · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120060 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2793435 2793435 PRJNA1120060_P_NODE_1795303_length_281_cov_1.639423_g1777291_i0 PRJNA1120060 1795303 281 1.639423 4.60677863 Bolinopsis microptera 2820187 Ctenophora other_Eukaryota 52.8 0.026   NTclustered gi|2700939183|ref|XM_063824833.1| 2820187 g1777291 i0 96.774 0.220640569395018 31 1 11 0 217 247 319 289 PREDICTED: Bolinopsis microptera ubiquitin carboxyl-terminal hydrolase 35-like (LOC134816090), transcript variant X1, mRNA blastn 62 52.8 1 Eukaryota Opisthokonta Metazoa Ctenophora Tentaculata Lobata Bolinopsidae Bolinopsis Bolinopsis microptera
13779946 13779946 PRJNA1120060_P_NODE_3229471_length_230_cov_2.726115_g3211364_i0 PRJNA1120060 3229471 230 2.726115 6.2700645 Euplokamis 1128080 Ctenophora other_Eukaryota 141 4.26e-29   NTclustered gi|2742502521|gb|PP905523.1| 1403701 g3211364 i0 94.505 42.0391304347826 91 5 40 0 140 230 5952 5862 Euplokamis dunlapae isolate SRR3048351 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9669 141 1 Eukaryota Opisthokonta Metazoa Ctenophora Tentaculata Cydippida Euplokamidae Euplokamis Euplokamis dunlapae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;