RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1120060" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120060 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2301090 2301090 PRJNA1120060_P_NODE_1771882_length_282_cov_1.516746_g1753871_i0 PRJNA1120060 1771882 282 1.516746 4.27722372 Batrachochytrium 100474 Fungi Fungi 52.8 0.026   NTclustered gi|2897832943|gb|CP161923.1| 109871 g1753871 i0 100 0.198581560283688 28 0 10 0 170 197 684764 684737 Batrachochytrium dendrobatidis strain JEL423 chromosome 1 blastn 56 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
2302608 2302608 PRJNA1120060_P_NODE_721342_length_330_cov_4.700389_g703507_i0 PRJNA1120060 721342 330 4.700389 15.5112837 Opisthokonta 33154 Fungi Fungi 52.8 0.031   NTclustered gi|30315032|gb|AF500785.1| 73868 g703507 i0 100 0.16969696969697 28 0 8 0 187 214 727 700 Piromyces sp. E2 clone lambda11 beta-glucosidase Cel1D gene, partial cds blastn 56 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp. E2
15053534 15053534 PRJNA1120060_P_NODE_2014232_length_272_cov_2.035176_g1996199_i0 PRJNA1120060 2014232 272 2.035176 5.53567872 Spizellomyces 4815 Fungi Fungi 213 1.08e-50   NTclustered gi|15147293|ref|NC_003052.1| 109760 g1996199 i0 91.083 28.8860294117647 157 14 58 0 5 161 2048 1892 Spizellomyces punctatus mitochondrion chromosome 1, complete sequence blastn 7857 215 0.990697674418605 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
20644240 20644240 PRJNA1120060_P_NODE_1805877_length_280_cov_4.270531_g1787863_i0 PRJNA1120060 1805877 280 4.270531 11.9574868 Batrachochytrium dendrobatidis 109871 Fungi Fungi 52.8 0.026   NTclustered gi|2897835648|gb|CP161925.1| 109871 g1787863 i0 100 0.1 28 0 10 0 46 73 614888 614915 Batrachochytrium dendrobatidis strain JEL423 chromosome 3 blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
20652598 20652598 PRJNA1120060_P_NODE_2429217_length_256_cov_2.989071_g2411148_i0 PRJNA1120060 2429217 256 2.989071 7.65202176 Fimicolochytrium jonesii 1396493 Fungi Fungi 54.7 0.006   NTclustered gi|2432113532|ref|XM_053073129.1| 1396493 g2411148 i0 100 0.11328125 29 0 11 0 36 64 414 386 Fimicolochytrium jonesii uncharacterized protein (EV422DRAFT_572470), partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;