RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1120060" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120060 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
252962 252962 PRJNA1120060_P_NODE_2551001_length_252_cov_2.212291_g2532926_i0 PRJNA1120060 2551001 252 2.212291 5.57497332 Chlamydia caviae 83557 Bacteria Bacteria 52.8 0.023   NTclustered gi|29835126|gb|AE015925.1| 227941 g2532926 i0 100 0.111111111111111 28 0 11 0 3 30 157113 157140 Chlamydophila caviae GPIC, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia caviae
4069923 4069923 PRJNA1120060_P_NODE_1799184_length_281_cov_1.274038_g1781172_i0 PRJNA1120060 1799184 281 1.274038 3.58004678 Candidatus Neptunichlamydia sp. REUL1 3064277 Bacteria Bacteria 54.7 0.007   NTclustered gi|2578658231|emb|OY735137.1| 3064277 g1781172 i0 100 0.103202846975089 29 0 10 0 98 126 1801882 1801854 Candidatus Neptunochlamydia sp. REUL1 isolate 46185 genome assembly, chromosome: 4 blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Neptunichlamydia Candidatus Neptunichlamydia sp. REUL1
5341327 5341327 PRJNA1120060_P_NODE_1460585_length_295_cov_3.076577_g1442600_i0 PRJNA1120060 1460585 295 3.076577 9.07590215 Candidatus Criblamydia sequanensis 340071 Bacteria Bacteria 302 2.46e-77   NTclustered gi|678241437|emb|LK031773.1| 1437425 g1442600 i0 84.953 1.08135593220339 319 24 100 10 1 295 85450 85768 Criblamydia sequanensis plasmid 1, strain CRIB-18, complete sequence blastn 319 302 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
9953395 9953395 PRJNA1120060_P_NODE_1122468_length_311_cov_2.752101_g1104533_i0 PRJNA1120060 1122468 311 2.752101 8.55903411 Chlamydia 810 Bacteria Bacteria 54.7 0.008   NTclustered gi|820669113|emb|LN847009.1| 83558 g1104533 i0 100 2.42443729903537 29 0 9 0 83 111 37248 37276 Chlamydia pneumoniae genome assembly GiD, chromosome : 1 blastn 754 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia pneumoniae
11228540 11228540 PRJNA1120060_P_NODE_1098609_length_311_cov_3.084034_g1080674_i0 PRJNA1120060 1098609 311 3.084034 9.59134574 Chlamydia 810 Bacteria Bacteria 56.5 0.002   NTclustered gi|2916079367|gb|CP137543.1| 83554 g1080674 i0 100 5.01607717041801 30 0 10 0 79 108 853496 853525 Chlamydia psittaci strain LS-2203 chromosome, complete genome blastn 1560 56.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
20643320 20643320 PRJNA1120060_P_NODE_1738117_length_283_cov_2.995238_g1720109_i0 PRJNA1120060 1738117 283 2.995238 8.47652354 Candidatus Criblamydia sequanensis 340071 Bacteria Bacteria 267 8.57e-67   NTclustered gi|678241437|emb|LK031773.1| 1437425 g1720109 i0 84.249 0.964664310954064 273 43 96 0 3 275 74291 74563 Criblamydia sequanensis plasmid 1, strain CRIB-18, complete sequence blastn 273 267 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
22702250 22702250 PRJNA1120060_P_NODE_1270458_length_308_cov_3.846809_g1252513_i0 PRJNA1120060 1270458 308 3.846809 11.84817172 Chlamydia 810 Bacteria Bacteria 52.8 0.029   NTclustered gi|2921951987|gb|CP137898.1| 2766982 g1252513 i0 100 0.727272727272727 28 0 9 0 262 289 825543 825570 Chlamydia crocodili strain 26-06 chromosome, complete genome blastn 224 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia crocodili
24468391 24468391 PRJNA1120060_P_NODE_174460_length_486_cov_3.140436_g158278_i0 PRJNA1120060 174460 486 3.140436 15.26251896 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 52.8 0.047   NTclustered gi|971146634|emb|LN879502.1| 389348 g158278 i0 100 0.0576131687242798 28 0 6 0 6 33 195570 195543 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;