RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1120060" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120060 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9159806 9159806 PRJNA1120060_P_NODE_1051268_length_311_cov_4.386555_g1033333_i0 PRJNA1120060 1051268 311 4.386555 13.64218605 Capsulimonas corticalis 2219043 Bacteria Bacteria 119 2.83e-22   NTclustered gi|2240447379|dbj|AP025739.1| 2219043 g1033333 i0 94.737 0.488745980707395 76 4 24 0 167 242 4503101 4503026 Capsulimonas corticalis AX-7 DNA, complete genome blastn 152 119 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis
15558631 15558631 PRJNA1120060_P_NODE_280013_length_427_cov_3.141243_g263003_i0 PRJNA1120060 280013 427 3.141243 13.41310761 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 52.8 0.041   NTclustered gi|2874253971|emb|OY970296.1| 157466 g263003 i0 100 0.0655737704918033 28 0 7 0 213 240 1669999 1669972 MAG: uncultured Armatimonadetes bacterium isolate MFD04408.bin.1.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;