RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1120060" and tax_clade = "Haptista"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA1120060 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1538371 1538371 PRJNA1120060_P_NODE_3516762_length_205_cov_6.037879_g3498636_i0 PRJNA1120060 3516762 205 6.037879 12.37765195 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 52.8 0.018   NTclustered gi|551622197|ref|XM_005791430.1| 280463 g3498636 i0 100 0.136585365853659 28 0 14 0 78 105 98 125 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
14275291 14275291 PRJNA1120060_P_NODE_2038012_length_271_cov_2.181818_g2019975_i0 PRJNA1120060 2038012 271 2.181818 5.91272678 Phaeocystis globosa 33658 Haptophyta other_Eukaryota 52.8 0.025   NTclustered gi|1983803697|gb|MT471327.1| 33658 g2019975 i0 100 0.929889298892989 28 0 10 0 66 93 90566 90539 Phaeocystis globosa strain CNS00066 chloroplast, complete genome blastn 252 52.8 1 Eukaryota Haptista   Haptophyta   Phaeocystales Phaeocystaceae Phaeocystis Phaeocystis globosa
21912672 21912672 PRJNA1120060_P_NODE_1289618_length_307_cov_3.854701_g1271671_i0 PRJNA1120060 1289618 307 3.854701 11.83393207 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 56.5 0.002   NTclustered gi|112132264|gb|DQ658307.1| 2903 g1271671 i0 100 0.0977198697068404 30 0 10 0 162 191 224 253 Emiliania huxleyi clone Plate1_K09_compl;77-2-12-B04 mRNA sequence blastn 30 56.5 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;