RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1118794" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1118794 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6609077 6609077 PRJNA1118794_P_NODE_6886_length_535_cov_2.331169_g6147_i0 PRJNA1118794 6886 535 2.331169 12.47175415 Oceanidesulfovibrio marinus 370038 Bacteria Bacteria 298 6.11e-76   NTclustered gi|1841667704|gb|CP039543.1| 370038 g6147 i0 77.248 65.3233644859813 545 101 100 20 1 535 1175187 1174656 Oceanidesulfovibrio marinus strain CS1 chromosome, complete genome blastn 34948 298 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Oceanidesulfovibrio Oceanidesulfovibrio marinus
10433866 10433866 PRJNA1118794_P_NODE_17609_length_354_cov_2.024911_g16859_i0 PRJNA1118794 17609 354 2.024911 7.16818494 Desulfolithobacter dissulfuricans 2795293 Bacteria Bacteria 95.3 5.49e-15   NTclustered gi|2304357171|dbj|AP024233.1| 2795293 g16859 i0 74.167 1.88135593220339 240 56 68 5 109 347 1925825 1925591 Desulfobulbaceae bacterium GF1 GF1 DNA, complete genome blastn 666 95.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfolithobacter Desulfolithobacter dissulfuricans
14260075 14260075 PRJNA1118794_P_NODE_72592_length_241_cov_0.916667_g71842_i0 PRJNA1118794 72592 241 0.916667 2.20916747 Desulfosediminicola ganghwensis 2569540 Bacteria Bacteria 52.8 0.022   NTclustered gi|1861338669|gb|CP050699.1| 2569540 g71842 i0 100 0.116182572614108 28 0 12 0 159 186 584552 584525 Desulfosediminicola ganghwensis strain IMCC35004 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfosediminicola Desulfosediminicola ganghwensis
21907715 21907715 PRJNA1118794_P_NODE_45858_length_256_cov_1.683060_g45108_i0 PRJNA1118794 45858 256 1.68306 4.3086336 Geobacter benzoatilyticus 2815309 Bacteria Bacteria 213 1.01e-50   NTclustered gi|2004017374|gb|CP071382.1| 2815309 g45108 i0 82.353 258.7109375 255 36 98 9 3 253 487786 488035 Geobacter benzoatilyticus strain Jerry-YX chromosome, complete genome blastn 66230 213 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter benzoatilyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;