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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA1118794" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1118794 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
230604 230604 PRJNA1118794_P_NODE_33321_length_284_cov_1.165877_g32571_i0 PRJNA1118794 33321 284 1.165877 3.31109068 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.026   NTclustered gi|1845972949|ref|NM_001356891.4| 6239 g32571 i0 96.774 0.316901408450704 31 1 11 0 133 163 100 70 Caenorhabditis elegans Apple domain-containing protein (T05B9.2), mRNA blastn 90 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
231030 231030 PRJNA1118794_P_NODE_68781_length_243_cov_0.905882_g68031_i0 PRJNA1118794 68781 243 0.905882 2.20129326 Strongyloides papillosus 174720 Nematoda Nematoda 128 3.54e-25   NTclustered gi|690018531|emb|LM525769.1| 174720 g68031 i0 89.32 4.13168724279835 103 9 42 2 6 107 28374 28475 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000058 blastn 1004 128 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
7883292 7883292 PRJNA1118794_P_NODE_14687_length_379_cov_2.725490_g13937_i0 PRJNA1118794 14687 379 2.72549 10.3296071 Caenorhabditis briggsae 6238 Nematoda Nematoda 311 5.4e-80   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g13937 i0 84.79 78.8891820580475 309 47 82 0 66 374 55 363 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 29899 311 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
10433856 10433856 PRJNA1118794_P_NODE_17089_length_358_cov_1.466667_g16339_i0 PRJNA1118794 17089 358 1.466667 5.25066786 Strongyloides ratti 34506 Nematoda Nematoda 220 8.78e-53   NTclustered gi|1376153203|ref|XM_024645200.1| 34506 g16339 i0 83.197 12.6173184357542 244 37 68 4 1 242 263 22 Strongyloides ratti Pyruvate dehydrogenase E1 component subunit beta, mitochondrial (SRAE_X000081100), partial mRNA blastn 4517 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
10434247 10434247 PRJNA1118794_P_NODE_45309_length_257_cov_1.673913_g44559_i0 PRJNA1118794 45309 257 1.673913 4.30195641 Strongyloides ratti 34506 Nematoda Nematoda 209 1.31e-49   NTclustered gi|1376147935|ref|XM_024654645.1| 34506 g44559 i0 81.569 2.28015564202335 255 45 99 2 4 257 767 514 Strongyloides ratti GMP reductase (SRAE_2000345100), partial mRNA blastn 586 209 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
10434424 10434424 PRJNA1118794_P_NODE_59769_length_246_cov_1.780347_g59019_i0 PRJNA1118794 59769 246 1.780347 4.37965362 Brugia malayi 6279 Nematoda Nematoda 228 3.4399999999999986e-55   NTclustered gi|2082298039|ref|XM_043075942.1| 6279 g59019 i0 88.36 22.7967479674797 189 22 77 0 50 238 1 189 Brugia malayi Uncharacterized protein (Bma-tbb-4), partial mRNA blastn 5608 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
11709228 11709228 PRJNA1118794_P_NODE_25190_length_312_cov_1.924686_g24440_i0 PRJNA1118794 25190 312 1.924686 6.00502032 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 163 1.2899999999999998e-35   NTclustered gi|150984457|gb|EF634871.1| 452809 g24440 i0 77.536 20.6634615384615 276 58 88 3 4 277 289 16 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 6447 163 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
11709536 11709536 PRJNA1118794_P_NODE_47330_length_253_cov_1.705556_g46580_i0 PRJNA1118794 47330 253 1.705556 4.31505668 Caenorhabditis briggsae 6238 Nematoda Nematoda 93.5 1.35e-14   NTclustered gi|268531145|ref|XM_002630653.1| 6238 g46580 i0 89.189 2.20948616600791 74 8 29 0 176 249 86 159 Caenorhabditis briggsae Protein CBR-PRDX-2 (Cbr-prdx-2), partial mRNA blastn 559 93.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
14259581 14259581 PRJNA1118794_P_NODE_30312_length_291_cov_1.756881_g29562_i0 PRJNA1118794 30312 291 1.756881 5.11252371 Strongyloides ratti 34506 Nematoda Nematoda 259 1.4800000000000002e-64   NTclustered gi|1376154927|ref|XM_024651418.1| 34506 g29562 i0 83.099 75.4776632302406 284 48 98 0 1 284 128 411 Strongyloides ratti Histone H3 (SRAE_X000165500), partial mRNA blastn 21964 259 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
15052638 15052638 PRJNA1118794_P_NODE_57412_length_247_cov_1.942529_g56662_i0 PRJNA1118794 57412 247 1.942529 4.79804663 Pristionchus 54125 Nematoda Nematoda 145 3.58e-30   NTclustered gi|150984639|gb|EF634981.1| 452806 g56662 i0 80.851 22.8218623481781 188 32 75 4 1 186 236 51 Pristionchus sp. 11 RS5228 small subunit ribosomal protein 27 (rps-27) mRNA, complete cds blastn 5637 145 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 11 RS5228
15532911 15532911 PRJNA1118794_P_NODE_10673_length_433_cov_2.472222_g9925_i0 PRJNA1118794 10673 433 2.472222 10.70472126 Strongyloides ratti 34506 Nematoda Nematoda 374 7.85e-99   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g9925 i0 86.377 165.131639722864 345 44 79 3 3 346 127 469 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 71502 374 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
15533767 15533767 PRJNA1118794_P_NODE_9053_length_469_cov_1.040404_g8305_i0 PRJNA1118794 9053 469 1.040404 4.87949476 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.56e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g8305 i0 81.166 26.3326226012793 223 28 46 11 68 283 49 264 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 12350 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
16807560 16807560 PRJNA1118794_P_NODE_2054_length_1018_cov_2.800000_g1485_i0 PRJNA1118794 2054 1018 2.8 28.504 Strongyloides ratti 34506 Nematoda Nematoda 634 8.059999999999999e-177   NTclustered gi|1376147725|ref|XM_024654528.1| 34506 g1485 i0 82.913 67.1512770137525 714 112 70 10 298 1006 1387 679 Strongyloides ratti ATP synthase subunit alpha, mitochondrial (SRAE_2000334600), partial mRNA blastn 68360 634 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
18876530 18876530 PRJNA1118794_P_NODE_10535_length_436_cov_1.415978_g9787_i0 PRJNA1118794 10535 436 1.415978 6.17366408 Metazoa 33208 Nematoda Nematoda 313 1.75e-80   NTclustered gi|2082298039|ref|XM_043075942.1| 6279 g9787 i0 81.013 81.0045871559633 395 73 90 2 43 436 1 394 Brugia malayi Uncharacterized protein (Bma-tbb-4), partial mRNA blastn 35318 316 0.990506329113924 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
20632229 20632229 PRJNA1118794_P_NODE_977_length_1475_cov_4.186163_g624_i0 PRJNA1118794 977 1475 4.186163 61.74590425 Strongyloides ratti 34506 Nematoda Nematoda 1090 0   NTclustered gi|1376148845|ref|XM_024642710.1| 34506 g624 i0 81.722 90.344406779661 1324 226 89 12 87 1402 1316 1 Strongyloides ratti Tubulin beta-2A chain (SRAE_2000390300), partial mRNA blastn 133258 1090 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;