RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1118794" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1118794 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4057109 4057109 PRJNA1118794_P_NODE_10384_length_439_cov_1.374317_g9636_i0 PRJNA1118794 10384 439 1.374317 6.03325163 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 595 1.5599999999999998e-165   NTclustered gi|2874253978|emb|OY970303.1| 412054 g9636 i0 91.344 128.166287015945 439 33 99 4 1 438 1903713 1903279 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 56265 595 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
11228361 11228361 PRJNA1118794_P_NODE_56569_length_248_cov_0.880000_g55819_i0 PRJNA1118794 56569 248 0.88 2.1824 Gemmatimonadaceae 219687 Bacteria Bacteria 315 2.59e-81   NTclustered gi|470475286|ref|NR_076270.1| 173480 g55819 i0 89.558 165.616935483871 249 25 100 1 1 248 2611 2859 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 41073 318 0.990566037735849 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
15533182 15533182 PRJNA1118794_P_NODE_28313_length_299_cov_1.362832_g27563_i0 PRJNA1118794 28313 299 1.362832 4.07486768 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 226 1.5499999999999994e-54   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g27563 i0 82.331 22.5819397993311 266 42 88 5 37 299 1555033 1554770 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 6752 226 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
15533738 15533738 PRJNA1118794_P_NODE_75753_length_226_cov_5.967320_g75003_i0 PRJNA1118794 75753 226 5.96732 13.4861432 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 309 1.08e-79   NTclustered gi|2874253978|emb|OY970303.1| 412054 g75003 i0 91.556 152.938053097345 225 18 99 1 1 225 1903871 1904094 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 34564 309 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16807792 16807792 PRJNA1118794_P_NODE_37734_length_274_cov_1.124378_g36984_i0 PRJNA1118794 37734 274 1.124378 3.08079572 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 374 4.7299999999999984e-99   NTclustered gi|2874253728|emb|OY969570.1| 412054 g36984 i0 92.969 214.277372262774 256 18 93 0 3 258 173868 173613 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 58712 374 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
20632032 20632032 PRJNA1118794_P_NODE_60517_length_246_cov_0.890173_g59767_i0 PRJNA1118794 60517 246 0.890173 2.18982558 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 346 9.1e-91   NTclustered gi|2874253995|emb|OY970320.1| 246130 g59767 i0 94.619 27.1869918699187 223 12 91 0 1 223 233289 233511 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 6688 346 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
23977335 23977335 PRJNA1118794_P_NODE_5739_length_588_cov_1.615534_g5002_i0 PRJNA1118794 5739 588 1.615534 9.49933992 Gemmatimonas 173479 Bacteria Bacteria 523 1.0199999999999999e-143   NTclustered gi|470475286|ref|NR_076270.1| 173480 g5002 i0 83.025 58.2602040816327 595 84 100 16 1 588 1824 1240 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 34257 523 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
24456936 24456936 PRJNA1118794_P_NODE_40700_length_267_cov_1.587629_g39950_i0 PRJNA1118794 40700 267 1.587629 4.23896943 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 303 6.11e-78   NTclustered gi|575456455|gb|CP007128.1| 861299 g39950 i0 89.916 78.2022471910112 238 20 88 4 31 266 3042618 3042853 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 20880 303 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;