RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1118794" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1118794 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1505723 1505723 PRJNA1118794_P_NODE_61042_length_246_cov_0.890173_g60292_i0 PRJNA1118794 61042 246 0.890173 2.18982558 Lytechinus pictus 7653 Echinodermata other_Eukaryota 60.2 1.33e-4   NTclustered gi|2707353090|ref|XM_064096257.1| 7653 g60292 i0 91.304 3.29268292682927 46 1 18 3 170 213 2102 2058 PREDICTED: Lytechinus pictus rootletin-like (LOC129257907), transcript variant X1, mRNA blastn 810 60.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
2300245 2300245 PRJNA1118794_P_NODE_16562_length_362_cov_2.124567_g15812_i0 PRJNA1118794 16562 362 2.124567 7.69093254 root 1 Root_unresolved Root_unresolved 52.8 0.034   NTclustered gi|2707352941|ref|XR_010292875.1| 7653 g15812 i0 100 0.386740331491713 28 0 8 0 228 255 1926 1953 PREDICTED: Lytechinus pictus uncharacterized LOC129257940 (LOC129257940), transcript variant X1, ncRNA blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;