RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1118794" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1118794 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2300292 2300292 PRJNA1118794_P_NODE_27142_length_304_cov_1.333333_g26392_i0 PRJNA1118794 27142 304 1.333333 4.05333232 Neochlamydia 112987 Bacteria Bacteria 435 2.41e-117   NTclustered gi|6165636|gb|AF098330.1|AF098330 95306 g26392 i0 92.484 103.615131578947 306 20 100 3 1 304 1 305 Endosymbiont of Acanthamoeba sp. TUME1 16S ribosomal RNA gene, partial sequence blastn 31499 436 0.997706422018349 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   endosymbiont of Acanthamoeba sp. TUME1
5334050 5334050 PRJNA1118794_P_NODE_66425_length_244_cov_0.900585_g65675_i0 PRJNA1118794 66425 244 0.900585 2.1974274 Neochlamydia hartmannellae 112235 Bacteria Bacteria 241 4.38e-59   NTclustered gi|194594624|gb|EU662269.1| 112235 g65675 i0 84.774 304.122950819672 243 33 99 3 1 243 2109 1871 Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence blastn 74206 241 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae
15533022 15533022 PRJNA1118794_P_NODE_17453_length_355_cov_3.315603_g16703_i0 PRJNA1118794 17453 355 3.315603 11.77039065 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 464 3.64e-126   NTclustered gi|2874253811|emb|OY969795.1| 464461 g16703 i0 90.223 129.039436619718 358 32 100 3 1 355 654812 655169 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 45809 464 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
16327411 16327411 PRJNA1118794_P_NODE_21653_length_329_cov_2.257812_g20903_i0 PRJNA1118794 21653 329 2.257812 7.42820148 Candidatus Protochlamydia 282132 Bacteria Bacteria 457 5.62e-124   NTclustered gi|1691252667|emb|BX908798.2| 264201 g20903 i0 91.793 138.604863221885 329 26 100 1 1 329 1251213 1251540 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 45601 457 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;