RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1118794" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1118794 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1505677 1505677 PRJNA1118794_P_NODE_5662_length_592_cov_3.292871_g4927_i0 PRJNA1118794 5662 592 3.292871 19.49379632 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 388 3.93e-103   NTclustered gi|657012367|gb|KF302531.1| 2850 g4927 i0 87.135 75.7837837837838 342 44 58 0 242 583 23 364 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 44864 388 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23977277 23977277 PRJNA1118794_P_NODE_36419_length_276_cov_1.960591_g35669_i0 PRJNA1118794 36419 276 1.960591 5.41123116 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 71.3 7.01e-8   NTclustered gi|223047888|gb|FJ032658.1| 285226 g35669 i0 97.561 14.554347826087 41 1 15 0 1 41 1880 1840 Uncultured marine diatom clone DH22_2A36 28S ribosomal RNA gene, partial sequence blastn 4017 71.3 1 Eukaryota Sar   Bacillariophyta         uncultured marine diatom

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;