RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1118794" and tax_kingdom = "Thermoproteati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermoproteati · 3 ✖

bioproject 1

  • PRJNA1118794 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5333754 5333754 PRJNA1118794_P_NODE_41745_length_265_cov_1.385417_g40995_i0 PRJNA1118794 41745 265 1.385417 3.67135505 Nitrosotalea devaniterrae 1078905 Archaea Archaea 483 7.249999999999998e-132   NTclustered gi|1003583480|emb|LN890280.1| 1078905 g40995 i0 99.623 100.849056603774 265 0 99 1 2 265 1345388 1345652 Candidatus Nitrosotalea devanaterra genome assembly, chromosome: 1 blastn 26725 483 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Nitrosotalea devaniterrae
9158302 9158302 PRJNA1118794_P_NODE_26128_length_308_cov_2.489362_g25378_i0 PRJNA1118794 26128 308 2.489362 7.66723496 Nitrosotalea devaniterrae 1078905 Archaea Archaea 564 2.99e-156   NTclustered gi|1003583480|emb|LN890280.1| 1078905 g25378 i0 99.675 89.6201298701299 308 1 100 0 1 308 1346527 1346220 Candidatus Nitrosotalea devanaterra genome assembly, chromosome: 1 blastn 27603 564 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Nitrosotalea devaniterrae
10433966 10433966 PRJNA1118794_P_NODE_24389_length_316_cov_1.008230_g23639_i0 PRJNA1118794 24389 316 1.00823 3.1860068 Nitrosotalea devaniterrae 1078905 Archaea Archaea 568 2.3799999999999994e-157   NTclustered gi|1003583480|emb|LN890280.1| 1078905 g23639 i0 99.051 13.873417721519 316 3 100 0 1 316 1346560 1346875 Candidatus Nitrosotalea devanaterra genome assembly, chromosome: 1 blastn 4384 568 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Nitrosotalea devaniterrae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;