RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1118794" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA1118794 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16807769 16807769 PRJNA1118794_P_NODE_35934_length_278_cov_0.970732_g35184_i0 PRJNA1118794 35934 278 0.970732 2.69863496 Thecamonas trahens 529818 Root_unresolved Root_unresolved 189 1.87e-43   NTclustered gi|923133140|ref|XM_013904582.1| 461836 g35184 i0 84.375 71.7805755395683 192 30 69 0 8 199 192 1 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_03185), partial mRNA blastn 19955 189 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
23182781 23182781 PRJNA1118794_P_NODE_26639_length_306_cov_1.931330_g25889_i0 PRJNA1118794 26639 306 1.93133 5.9098698 Thecamonas trahens 529818 Root_unresolved Root_unresolved 158 5.88e-34   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g25889 i0 76.656 32.297385620915 317 54 99 15 3 306 215 524 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 9883 158 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;