RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1115053 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11227642 11227642 PRJNA1115053_S_NODE_16509_length_491_cov_4.412946_g14729_i0 PRJNA1115053 16509 491 4.412946 21.66756486 root 1 Root_unresolved Root_unresolved 56.5 0.004   NTclustered gi|779731694|gb|CP010430.1| 35554 g14729 i0 100 0.977596741344195 30 0 6 0 22 51 2076907 2076936 Geobacter sulfurreducens strain AM-1 genome blastn 480 56.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
15525945 15525945 PRJNA1115053_S_NODE_141793_length_225_cov_1.054945_g139976_i0 PRJNA1115053 141793 225 1.054945 2.37362625 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 87.9 5.48e-13   NTclustered gi|2621786209|emb|OY782667.1| 2049043 g139976 i0 85.882 14.8088888888889 85 8 37 4 142 225 1361086 1361005 MAG: Desulfovibrionaceae bacterium isolate c63d6e66-0b86-4b38-bb75-751bde387f56 genome assembly, chromosome: 1 blastn 3332 87.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
21899956 21899956 PRJNA1115053_S_NODE_129258_length_233_cov_4.042105_g127441_i0 PRJNA1115053 129258 233 4.042105 9.41810465 Desulfovibrio aminophilus 81425 Bacteria Bacteria 300 6.74e-77   NTclustered gi|2908463109|gb|CP168306.1| 81425 g127441 i0 90.086 245.536480686695 232 22 99 1 3 233 222640 222409 MAG: Desulfovibrio aminophilus isolate Co chromosome, complete genome blastn 57210 300 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio aminophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;