contig_metadata
6 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1024357 | 1024357 | PRJNA1115053_S_NODE_238301_length_179_cov_2.338235_g236484_i0 | PRJNA1115053 | 238301 | 179 | 2.338235 | 4.18544065 | Brachyspira | 29521 | Bacteria | Bacteria | 52.8 | 0.015 | NTclustered | gi|2620055352|gb|CP117021.1| | 159 | g236484 | i0 | 100 | 0.46927374301676 | 28 | 0 | 16 | 0 | 52 | 79 | 2618433 | 2618406 | Brachyspira hyodysenteriae strain ZH1179 chromosome, complete genome | blastn | 84 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira hyodysenteriae | ||
| 5328876 | 5328876 | PRJNA1115053_S_NODE_246385_length_177_cov_1.074627_g244568_i0 | PRJNA1115053 | 246385 | 177 | 1.074627 | 1.90208979 | Brucepastera parasyntrophica | 2880008 | Bacteria | Bacteria | 58.4 | 3.21e-4 | NTclustered | gi|2198899484|gb|CP084606.1| | 2880008 | g244568 | i0 | 94.737 | 0.214689265536723 | 38 | 1 | 21 | 1 | 57 | 94 | 1855623 | 1855659 | Brucepastera parasyntrophica strain RmG11 chromosome, complete genome | blastn | 38 | 58.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Brucepastera | Brucepastera parasyntrophica | ||
| 6607569 | 6607569 | PRJNA1115053_S_NODE_80546_length_282_cov_1.807531_g78729_i0 | PRJNA1115053 | 80546 | 282 | 1.807531 | 5.09723742 | Treponema saccharophilum | 165 | Bacteria | Bacteria | 58.4 | 5.59e-4 | NTclustered | gi|2581918939|dbj|AP025288.1| | 165 | g78729 | i0 | 100 | 10.7340425531915 | 31 | 0 | 11 | 0 | 46 | 76 | 1667165 | 1667135 | Treponema saccharophilum JCM 32279 DNA, complete genome | blastn | 3027 | 58.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema saccharophilum | ||
| 15052343 | 15052343 | PRJNA1115053_S_NODE_54912_length_325_cov_3.769504_g53095_i0 | PRJNA1115053 | 54912 | 325 | 3.769504 | 12.250888 | Brachyspira | 29521 | Bacteria | Bacteria | 479 | 1.1799999999999993e-130 | NTclustered | gi|507148214|ref|NR_103021.1| | 84377 | g53095 | i0 | 93.231 | 118.926153846154 | 325 | 22 | 100 | 0 | 1 | 325 | 487 | 163 | Brachyspira intermedia strain PWS/A 23S ribosomal RNA gene, complete sequence | blastn | 38651 | 479 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira intermedia | ||
| 20151176 | 20151176 | PRJNA1115053_S_NODE_87136_length_273_cov_53.934783_g85319_i0 | PRJNA1115053 | 87136 | 273 | 53.934783 | 147.24195759 | Borrelia | 138 | Bacteria | Bacteria | 52.8 | 0.025 | NTclustered | gi|2668652688|gb|CP129313.1| | 142 | g85319 | i0 | 100 | 0.205128205128205 | 28 | 0 | 10 | 0 | 172 | 199 | 11682 | 11655 | Borrelia turicatae strain BTCAM1 plasmid lp32, complete sequence | blastn | 56 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Borreliaceae | Borrelia | Borrelia turicatae | ||
| 23177249 | 23177249 | PRJNA1115053_S_NODE_2059_length_1117_cov_8.033520_g1372_i0 | PRJNA1115053 | 2059 | 1117 | 8.03352 | 89.7344184 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 143 | 6.56e-29 | NTclustered | gi|2649718696|emb|OZ001226.1| | 2202144 | g1372 | i0 | 81.461 | 13.585496866607 | 178 | 30 | 16 | 3 | 345 | 520 | 74373 | 74549 | MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 | blastn | 15175 | 143 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;