RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1115053 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
229184 229184 PRJNA1115053_S_NODE_70101_length_297_cov_3.645669_g68284_i0 PRJNA1115053 70101 297 3.645669 10.82763693 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.028   NTclustered gi|690493181|emb|LN038990.1| 99802 g68284 i0 100 0.0942760942760943 28 0 9 0 20 47 78 51 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0038092 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
2773183 2773183 PRJNA1115053_S_NODE_107323_length_252_cov_1.712919_g105506_i0 PRJNA1115053 107323 252 1.712919 4.31655588 Diplorchis hangzhouensis 1131906 Platyhelminthes Platyhelminthes 54.7 0.006   NTclustered gi|379771686|gb|JQ038227.1| 1131906 g105506 i0 100 0.115079365079365 29 0 12 0 147 175 5361 5389 Diplorchis hangzhouensis mitochondrion sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Polystomatidea Polystomatidae Diplorchis Diplorchis hangzhouensis
4055762 4055762 PRJNA1115053_S_NODE_58444_length_318_cov_2.683636_g56627_i0 PRJNA1115053 58444 318 2.683636 8.53396248 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 257 5.8800000000000006e-64   NTclustered gi|60698656|gb|AY915745.1| 6182 g56627 i0 95.679 12.3993710691824 162 3 50 1 1 158 43 204 Schistosoma japonicum SJCHGC09658 protein mRNA, partial cds blastn 3943 257 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
5329818 5329818 PRJNA1115053_S_NODE_288985_length_164_cov_1.586777_g287168_i0 PRJNA1115053 288985 164 1.586777 2.60231428 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 303 3.42e-78   NTclustered gi|60687985|gb|AY915105.1| 6182 g287168 i0 100 17.2134146341463 164 0 100 0 1 164 298 461 Schistosoma japonicum SJCHGC03015 protein mRNA, complete cds blastn 2823 303 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
7877888 7877888 PRJNA1115053_S_NODE_209547_length_190_cov_1.306122_g207730_i0 PRJNA1115053 209547 190 1.306122 2.4816318 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.016   NTclustered gi|690520181|emb|LN071303.1| 99802 g207730 i0 100 0.294736842105263 28 0 15 0 99 126 169 196 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0068749 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
10429258 10429258 PRJNA1115053_S_NODE_241829_length_178_cov_1.777778_g240012_i0 PRJNA1115053 241829 178 1.777778 3.16444484 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 209 8.44e-50   NTclustered gi|28317869|gb|AY223392.1| 6182 g240012 i0 87.978 4.65168539325843 183 14 100 3 1 178 187 366 Schistosoma japonicum clone ZZZ294 mRNA sequence blastn 828 209 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
19355707 19355707 PRJNA1115053_S_NODE_91476_length_268_cov_4.208889_g89659_i0 PRJNA1115053 91476 268 4.208889 11.27982252 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 154 6.54e-33   NTclustered gi|56407631|gb|AY834397.1| 6183 g89659 i0 94.898 17.8805970149254 98 5 37 0 171 268 39 136 Schistosoma mansoni IGF-I precursor-like gene, intron 2 blastn 4792 154 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
24449692 24449692 PRJNA1115053_S_NODE_146500_length_221_cov_14.359551_g144683_i0 PRJNA1115053 146500 221 14.359551 31.73460771 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 381 2.2e-101   NTclustered gi|60698688|gb|AY915747.1| 6182 g144683 i0 97.738 2.37556561085973 221 5 100 0 1 221 282 62 Schistosoma japonicum SJCHGC09661 protein mRNA, partial cds blastn 525 381 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
24450046 24450046 PRJNA1115053_S_NODE_161520_length_212_cov_5.721893_g159703_i0 PRJNA1115053 161520 212 5.721893 12.13041316 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 261 2.84e-65   NTclustered gi|60700756|gb|AY915859.1| 6182 g159703 i0 88.889 1.35377358490566 216 19 99 1 1 211 217 2 Schistosoma japonicum SJCHGC09793 protein mRNA, complete cds blastn 287 261 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;