RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1115053 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1503281 1503281 PRJNA1115053_S_NODE_41862_length_358_cov_1.857143_g40045_i0 PRJNA1115053 41862 358 1.857143 6.64857194 Archangium violaceum 83451 Bacteria Bacteria 322 2.34e-83   NTclustered gi|2579675135|gb|CP043493.1| 83451 g40045 i0 83.196 212.301675977654 363 50 100 9 1 358 5180967 5181323 Archangium violaceum strain Cbvi 34 chromosome, complete genome blastn 76004 322 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
11702806 11702806 PRJNA1115053_S_NODE_171250_length_207_cov_2.268293_g169433_i0 PRJNA1115053 171250 207 2.268293 4.69536651 Pendulispora albinea 2741071 Bacteria Bacteria 241 3.6e-59   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g169433 i0 87.805 126.009661835749 205 25 99 0 1 205 3588112 3587908 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 26084 241 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
15051844 15051844 PRJNA1115053_S_NODE_126152_length_236_cov_1.492228_g124335_i0 PRJNA1115053 126152 236 1.492228 3.52165808 Sorangium 39643 Bacteria Bacteria 226 1.18e-54   NTclustered gi|1566478966|gb|CP012672.1| 56 g124335 i0 84.848 90.0889830508475 231 27 95 7 12 236 6778774 6778546 Sorangium cellulosum strain So ce836 chromosome, complete genome blastn 21261 226 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
18074086 18074086 PRJNA1115053_S_NODE_10415_length_581_cov_22.996283_g8786_i0 PRJNA1115053 10415 581 22.996283 133.60840423 Haliangium ochraceum 80816 Bacteria Bacteria 399 1.7799999999999996e-106   NTclustered gi|262076673|gb|CP001804.1| 502025 g8786 i0 80 134.695352839931 570 90 96 19 1 556 2901276 2900717 Haliangium ochraceum DSM 14365, complete genome blastn 78258 399 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;