RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1115053 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
225596 225596 PRJNA1115053_S_NODE_236241_length_180_cov_1.401460_g234424_i0 PRJNA1115053 236241 180 1.40146 2.522628 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 73.1 1.17e-8   NTclustered gi|2289441675|gb|MW840372.1| 7668 g234424 i0 78.195 1.01111111111111 133 16 67 7 45 164 640 508 Strongylocentrotus purpuratus isolate 331 Transposase-like gene, complete sequence blastn 182 73.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
15526992 15526992 PRJNA1115053_S_NODE_185473_length_200_cov_2.140127_g183656_i0 PRJNA1115053 185473 200 2.140127 4.280254 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 63.9 8.03e-6   NTclustered gi|2289441675|gb|MW840372.1| 7668 g183656 i0 82.5 1.1 80 7 38 5 30 105 916 840 Strongylocentrotus purpuratus isolate 331 Transposase-like gene, complete sequence blastn 220 63.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;