RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1115053 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1497527 1497527 PRJNA1115053_S_NODE_117862_length_242_cov_4.718593_g116045_i0 PRJNA1115053 117862 242 4.718593 11.41899506 Mantoniella tinhauana 3097027 Plants Plants 76.8 1.29e-9   NTclustered gi|2735153281|gb|CP140066.1| 3097027 g116045 i0 95.833 34.6528925619835 48 1 23 1 131 177 212696 212743 Mantoniella tinhauana isolate LFS chromosome 5 blastn 8386 76.8 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
12503244 12503244 PRJNA1115053_S_NODE_203690_length_192_cov_2.255034_g201873_i0 PRJNA1115053 203690 192 2.255034 4.32966528 Trebouxiophyceae 75966 Plants Plants 63.9 7.64e-6   NTclustered gi|371782132|emb|HE610164.1| 33092 g201873 i0 95 34.0052083333333 40 2 21 0 5 44 76 37 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6529 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
16803415 16803415 PRJNA1115053_S_NODE_265714_length_171_cov_1.125000_g263897_i0 PRJNA1115053 265714 171 1.125 1.92375 Mantoniella tinhauana 3097027 Plants Plants 52.8 0.014   NTclustered gi|2735153277|gb|CP140062.1| 3097027 g263897 i0 100 0.16374269005848 28 0 16 0 144 171 8867620 8867593 Mantoniella tinhauana isolate LFS chromosome 1 blastn 28 52.8 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
24448923 24448923 PRJNA1115053_S_NODE_116480_length_244_cov_1.139303_g114663_i0 PRJNA1115053 116480 244 1.139303 2.77989932 Chlorella vulgaris 3077 Plants Plants 189 1.6099999999999996e-43   NTclustered gi|2254866750|gb|MW900257.1| 3077 g114663 i0 93.023 7.48360655737705 129 9 53 0 45 173 149864 149736 Chlorella vulgaris chloroplast, complete genome blastn 1826 189 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;