RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1115053 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16326959 16326959 PRJNA1115053_S_NODE_2413_length_1035_cov_9.360887_g1656_i0 PRJNA1115053 2413 1035 9.360887 96.885180449999993 Chloroflexus 1107 Bacteria Bacteria 590 1.8e-163   NTclustered gi|470482818|ref|NR_076553.1| 1108 g1656 i0 82.03 493.2 729 98 69 21 1 718 1160 454 Chloroflexus aurantiacus strain J-10-fl 23S ribosomal RNA gene, complete sequence blastn 510462 592 0.996621621621622 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aurantiacus
18078102 18078102 PRJNA1115053_S_NODE_27315_length_414_cov_1.975741_g25505_i0 PRJNA1115053 27315 414 1.975741 8.17956774 Litorilinea aerophila 1204385 Bacteria Bacteria 444 5.62e-120   NTclustered gi|393193706|gb|JQ733906.1| 1204385 g25505 i0 86.275 117.413043478261 408 56 99 0 7 414 4569 4162 Litorilinea aerophila strain PRI-4131 small subunit ribosomal RNA, tRNA-Ile (trnI), and large subunit ribosomal RNA genes, complete sequence blastn 48609 444 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Litorilinea Litorilinea aerophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;