RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1115053 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1024663 1024663 PRJNA1115053_S_NODE_91601_length_268_cov_3.062222_g89784_i0 PRJNA1115053 91601 268 3.0622220000000002 8.20675496 Helicobacter 209 Bacteria Bacteria 496 9.429999999999999e-136   NTclustered gi|50957175|gb|AY596260.1| 213 g89784 i0 100 120.985074626866 268 0 100 0 1 268 1628 1361 Helicobacter cinaedi strain CCUG 33804 23S ribosomal RNA gene, partial sequence blastn 32424 496 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi
3575210 3575210 PRJNA1115053_S_NODE_46283_length_346_cov_1.528053_g44466_i0 PRJNA1115053 46283 346 1.528053 5.28706338 Helicobacter 209 Bacteria Bacteria 634 2.5599999999999996e-177   NTclustered gi|2157108461|dbj|AP025204.1| 213 g44466 i0 99.712 126.390173410405 347 0 100 1 1 346 128003 127657 Helicobacter cinaedi 94105 DNA, complete genome blastn 43731 634 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi
6603254 6603254 PRJNA1115053_S_NODE_216486_length_187_cov_1.666667_g214669_i0 PRJNA1115053 216486 187 1.666667 3.11666729 Caminibacter mediatlanticus 291048 Bacteria Bacteria 54.7 0.004   NTclustered gi|1666442357|gb|CP040463.1| 391592 g214669 i0 100 0.155080213903743 29 0 16 0 77 105 795267 795239 Caminibacter mediatlanticus TB-2 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Caminibacter Caminibacter mediatlanticus
7879419 7879419 PRJNA1115053_S_NODE_273607_length_168_cov_2.688000_g271790_i0 PRJNA1115053 273607 168 2.688 4.51584 Malaciobacter marinus 505249 Bacteria Bacteria 54.7 0.004   NTclustered gi|1474785413|gb|CP032101.1| 505249 g271790 i0 100 0.172619047619048 29 0 17 0 140 168 1400447 1400475 Malaciobacter marinus strain JCM 15502 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;