RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 9 ✖

bioproject 1

  • PRJNA1115053 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
223953 223953 PRJNA1115053_S_NODE_169061_length_208_cov_3.200000_g167244_i0 PRJNA1115053 169061 208 3.2 6.656 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 381 2.0499999999999995e-101   NTclustered gi|821341785|gb|CP011389.1| 1309411 g167244 i0 100 206.735576923077 206 0 99 0 3 208 1637305 1637510 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 43001 381 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
224755 224755 PRJNA1115053_S_NODE_20161_length_458_cov_8.971084_g18361_i0 PRJNA1115053 20161 458 8.971084 41.08756472 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 785 0   NTclustered gi|821341785|gb|CP011389.1| 1309411 g18361 i0 99.087 227.480349344978 438 3 95 1 22 458 1638923 1638486 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 104186 785 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
1024623 1024623 PRJNA1115053_S_NODE_72221_length_294_cov_2.075697_g70404_i0 PRJNA1115053 72221 294 2.075697 6.10254918 Deinococcus 1298 Bacteria Bacteria 544 3.69e-150   NTclustered gi|1435316362|gb|CP031158.1| 980427 g70404 i0 100 199.006802721088 294 0 100 0 1 294 2148595 2148302 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 58508 544 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
3574964 3574964 PRJNA1115053_S_NODE_238943_length_179_cov_1.764706_g237126_i0 PRJNA1115053 238943 179 1.764706 3.15882374 Deinococcus 1298 Bacteria Bacteria 331 1.74e-86   NTclustered gi|1435316362|gb|CP031158.1| 980427 g237126 i0 100 362.966480446927 179 0 100 0 1 179 1792675 1792497 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 64971 331 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
11703398 11703398 PRJNA1115053_S_NODE_196390_length_195_cov_2.842105_g194573_i0 PRJNA1115053 196390 195 2.842105 5.54210475 Deinococcus geothermalis 68909 Bacteria Bacteria 361 2.46e-95   NTclustered gi|94554390|gb|CP000359.1| 319795 g194573 i0 100 94.2102564102564 195 0 100 0 1 195 326277 326083 Deinococcus geothermalis DSM 11300, complete genome blastn 18371 361 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
12981259 12981259 PRJNA1115053_S_NODE_316211_length_157_cov_1.631579_g314394_i0 PRJNA1115053 316211 157 1.631579 2.56157903 Marinitoga aeolica 2809031 Bacteria Bacteria 52.8 0.013   NTclustered gi|2498963055|gb|CP069362.1| 2809031 g314394 i0 100 0.178343949044586 28 0 18 0 93 120 2292209 2292236 Marinitoga aeolica strain BP5-C20A chromosome, complete genome blastn 28 52.8 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Marinitoga Marinitoga aeolica
13777589 13777589 PRJNA1115053_S_NODE_161691_length_212_cov_3.047337_g159874_i0 PRJNA1115053 161691 212 3.047337 6.46035444 Deinococcus 1298 Bacteria Bacteria 377 2.71e-100   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g159874 i0 99.048 193.084905660377 210 2 99 0 1 210 1454226 1454017 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 40934 377 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
20150681 20150681 PRJNA1115053_S_NODE_143596_length_223_cov_3.783333_g141779_i0 PRJNA1115053 143596 223 3.783333 8.43683259 Allomeiothermus 2935559 Bacteria Bacteria 412 7.88e-111   NTclustered gi|470486339|ref|NR_076751.1| 52022 g141779 i0 100 47.9103139013453 223 0 100 0 1 223 1054 832 Meiothermus silvanus strain DSM 9946 23S ribosomal RNA gene, complete sequence blastn 10684 412 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus
25251040 25251040 PRJNA1115053_S_NODE_77400_length_286_cov_3.156379_g75583_i0 PRJNA1115053 77400 286 3.156379 9.02724394 Deinococcus 1298 Bacteria Bacteria 486 6.1099999999999986e-133   NTclustered gi|1514756464|dbj|LC433574.1| 47478 g75583 i0 97.535 104.933566433566 284 7 99 0 1 284 816 533 Deinococcus sp. TM138 gene for 16S ribosomal RNA, partial sequence blastn 30011 486 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;