RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA1115053 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1499083 1499083 PRJNA1115053_S_NODE_181122_length_202_cov_2.440252_g179305_i0 PRJNA1115053 181122 202 2.440252 4.92930904 Endogenous prairie dog retrovirus 2744144 Viruses Viruses 353 4.3e-93   NTclustered gi|1858807278|gb|MT361317.1| 2744144 g179305 i0 98.049 29.4108910891089 205 1 100 1 1 202 2997 2793 Endogenous prairie dog retrovirus isolate prairie dog 14-1382 Gag (gag), Pro (pro), and Pol (pol) genes, complete cds blastn 5941 353 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Endogenous prairie dog retrovirus
12983694 12983694 PRJNA1115053_S_NODE_94811_length_265_cov_1.049550_g92994_i0 PRJNA1115053 94811 265 1.04955 2.7813075 Endogenous prairie dog retrovirus 2744144 Viruses Viruses 448 2.6399999999999996e-121   NTclustered gi|1858807278|gb|MT361317.1| 2744144 g92994 i0 96.981 28.8264150943396 265 8 100 0 1 265 2342 2078 Endogenous prairie dog retrovirus isolate prairie dog 14-1382 Gag (gag), Pro (pro), and Pol (pol) genes, complete cds blastn 7639 448 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Endogenous prairie dog retrovirus
20623547 20623547 PRJNA1115053_S_NODE_102497_length_256_cov_6.741784_g100680_i0 PRJNA1115053 102497 256 6.741784 17.25896704 Murine leukemia-related retroviruses 99182 Viruses Viruses 451 1.96e-122   NTclustered gi|336087897|emb|FR872816.1| 438045 g100680 i0 98.438 97.9921875 256 4 100 0 1 256 6201 6456 XMRV complete proviral genome, isolate S-162 blastn 25086 451 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Murine leukemia-related retroviruses

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;