RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1115053 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
225025 225025 PRJNA1115053_S_NODE_212041_length_189_cov_1.315068_g210224_i0 PRJNA1115053 212041 189 1.315068 2.48547852 Fusobacterium mortiferum 850 Bacteria Bacteria 56.5 0.001   NTclustered gi|1370540179|gb|CP028102.1| 469616 g210224 i0 100 0.158730158730159 30 0 16 0 50 79 2633186 2633215 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 30 56.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
14254550 14254550 PRJNA1115053_S_NODE_233432_length_181_cov_1.391304_g231615_i0 PRJNA1115053 233432 181 1.391304 2.51826024 Fusobacterium gastrosuis 1755100 Bacteria Bacteria 270 3.899999999999999e-68   NTclustered gi|1795735174|emb|LT607734.1| 1755100 g231615 i0 94.798 447.519337016575 173 9 96 0 9 181 344662 344490 Fusobacterium sp. P6 Po strain Fusobacterium gastrosuis sp. nov. CDW1, P6 Po genome assembly, chromosome: chr blastn 81001 270 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gastrosuis
20628316 20628316 PRJNA1115053_S_NODE_307557_length_159_cov_1.965517_g305740_i0 PRJNA1115053 307557 159 1.965517 3.12517203 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 233 4.38e-57   NTclustered gi|922689899|gb|CP012410.1| 712357 g305740 i0 94.667 456.245283018868 150 8 94 0 1 150 52953 52804 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 72543 233 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;