RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA1115053 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1024342 1024342 PRJNA1115053_S_NODE_231301_length_182_cov_1.035971_g229484_i0 PRJNA1115053 231301 182 1.035971 1.88546722 Methanothermobacter 145260 Archaea Archaea 152 1.4799999999999998e-32   NTclustered gi|2308640859|gb|CP104550.1| 145261 g229484 i0 81.768 2.98351648351648 181 33 99 0 1 181 494382 494562 Methanothermobacter wolfeii strain DSM 2970 chromosome, complete genome blastn 543 152 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter wolfeii
25250711 25250711 PRJNA1115053_S_NODE_233980_length_181_cov_1.072464_g232163_i0 PRJNA1115053 233980 181 1.072464 1.94115984 Methanobrevibacter 2172 Archaea Archaea 235 1.42e-57   NTclustered gi|2791693311|gb|CP144200.1| 2173 g232163 i0 91.765 6.57458563535912 170 13 93 1 1 169 383906 384075 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 1190 235 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;