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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 6 ✖

bioproject 1

  • PRJNA1115053 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2775285 2775285 PRJNA1115053_S_NODE_194063_length_196_cov_2.660131_g192246_i0 PRJNA1115053 194063 196 2.660131 5.21385676 Diphylleia rotans 190327 Root_unresolved Root_unresolved 357 3.2099999999999996e-94   NTclustered gi|1200177731|gb|MF039365.1| 190327 g192246 i0 99.49 1 196 1 100 0 1 196 2971 2776 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 196 357 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
11703333 11703333 PRJNA1115053_S_NODE_193770_length_196_cov_5.581699_g191953_i0 PRJNA1115053 193770 196 5.581699 10.94013004 Diphylleia rotans 190327 Root_unresolved Root_unresolved 355 1.15e-93   NTclustered gi|1200177731|gb|MF039365.1| 190327 g191953 i0 99.49 44.9438775510204 196 0 100 1 1 196 4455 4261 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8809 355 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
12979872 12979872 PRJNA1115053_S_NODE_253631_length_174_cov_2.389313_g251814_i0 PRJNA1115053 253631 174 2.389313 4.15740462 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 56.5 0.001   NTclustered gi|2733867141|gb|PP812520.1| 440571 g251814 i0 100 0.833333333333333 30 0 17 0 1 30 74 103 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 145 56.5 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
18076995 18076995 PRJNA1115053_S_NODE_223475_length_184_cov_6.446809_g221658_i0 PRJNA1115053 223475 184 6.446809 11.86212856 Collodictyon triciliatum 190325 Root_unresolved Root_unresolved 324 3.01e-84   NTclustered gi|1200177733|gb|MF039367.1| 190325 g221658 i0 98.37 100.146739130435 184 3 100 0 1 184 5655 5838 Collodictyon triciliatum isolate C_Arungen 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18427 324 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum
23178886 23178886 PRJNA1115053_S_NODE_276339_length_168_cov_1.048000_g274522_i0 PRJNA1115053 276339 168 1.048 1.76064 Diphylleia rotans 190327 Root_unresolved Root_unresolved 76.8 8.37e-10   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g274522 i0 95.745 0.279761904761905 47 2 28 0 2 48 45334 45288 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 47 76.8 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
23181567 23181567 PRJNA1115053_S_NODE_72039_length_294_cov_3.115538_g70222_i0 PRJNA1115053 72039 294 3.115538 9.15968172 Diphylleia rotans 190327 Root_unresolved Root_unresolved 527 3.719999999999999e-145   NTclustered gi|2733486389|gb|PP809657.1| 190327 g70222 i0 99.653 56.3163265306122 288 1 98 0 1 288 651 938 Diphylleia rotans isolate Col24 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 16557 527 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;