RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1115053" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA1115053 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9152122 9152122 PRJNA1115053_S_NODE_183688_length_201_cov_1.822785_g181871_i0 PRJNA1115053 183688 201 1.822785 3.66379785 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 52.8 0.017   NTclustered gi|292559443|ref|NC_013986.1| 5778 g181871 i0 100 0.278606965174129 28 0 14 0 1 28 27505 27532 Hartmannella vermiformis mitochondrion, complete genome blastn 56 52.8 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14255422 14255422 PRJNA1115053_S_NODE_271292_length_169_cov_1.523810_g269475_i0 PRJNA1115053 271292 169 1.52381 2.5752389 Tychosporium micropunctatum 2966351 Evosea other_Eukaryota 108 2.97e-19   NTclustered gi|2467140638|dbj|LC720132.1| 2966351 g269475 i0 100 33.7396449704142 58 0 34 0 112 169 602 545 Tychosporium micropunctatum YIP-40 gene for 18S rRNA, partial sequence blastn 5702 108 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium micropunctatum
14258402 14258402 PRJNA1115053_S_NODE_77532_length_286_cov_2.362140_g75715_i0 PRJNA1115053 77532 286 2.36214 6.7557204 Entamoeba invadens 33085 Evosea other_Eukaryota 52.8 0.026   NTclustered gi|1685363|gb|U78320.1|EIU78320 33085 g75715 i0 100 0.0979020979020979 28 0 10 0 93 120 323 350 Entamoeba invadens chitinase gene, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
16803602 16803602 PRJNA1115053_S_NODE_273834_length_168_cov_2.304000_g272017_i0 PRJNA1115053 273834 168 2.304 3.87072 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 311 2.11e-80   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g272017 i0 100 98.1547619047619 168 0 100 0 1 168 544 377 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 16490 311 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
19350354 19350354 PRJNA1115053_S_NODE_184576_length_201_cov_1.189873_g182759_i0 PRJNA1115053 184576 201 1.189873 2.39164473 Tychosporium acutostipes 668358 Evosea other_Eukaryota 165 2.15e-36   NTclustered gi|2467140639|dbj|LC720133.1| 668358 g182759 i0 88.028 68.7014925373134 142 13 70 4 62 201 796 935 Tychosporium acutostipes YIP-60 gene for 18S rRNA, partial sequence blastn 13809 165 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
24455300 24455300 PRJNA1115053_S_NODE_64060_length_307_cov_4.219697_g62243_i0 PRJNA1115053 64060 307 4.219697 12.95446979 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 111 4.66e-20   NTclustered gi|470459156|ref|XM_004341277.1| 1257118 g62243 i0 92.308 6.48534201954397 78 6 25 0 13 90 1089 1166 Acanthamoeba castellanii str. Neff ribosomal protein L3, putative (ACA1_264110), partial mRNA blastn 1991 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;