RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA1113956" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1113956 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
221868 221868 PRJNA1113956_P_NODE_17541_length_279_cov_1.121359_g17201_i0 PRJNA1113956 17541 279 1.121359 3.12859161 Bradybaena similaris 145626 Mollusca Mollusca 121 6.94e-23   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g17201 i0 89.583 0.344086021505376 96 9 34 1 64 158 58894405 58894310 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 96 121 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
221941 221941 PRJNA1113956_P_NODE_3021_length_1060_cov_1.779129_g2791_i0 PRJNA1113956 3021 1060 1.779129 18.8587674 Mizuhopecten yessoensis 6573 Mollusca Mollusca 104 2.93e-17   NTclustered gi|1207908411|ref|XM_021506535.1| 6573 g2791 i0 75.829 6.58867924528302 211 47 20 4 534 742 991 1199 PREDICTED: Mizuhopecten yessoensis Krueppel-like factor 6 (LOC110456019), mRNA blastn 6984 104 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
1496602 1496602 PRJNA1113956_P_NODE_1202_length_1614_cov_14.957171_g1102_i0 PRJNA1113956 1202 1614 14.957171 241.40873994 Ostrea edulis 37623 Mollusca Mollusca 86.1 1.64e-11   NTclustered gi|2507356719|ref|XM_048922008.2| 37623 g1102 i0 80.469 0.219950433705081 128 12 13 11 511 636 2640 2756 PREDICTED: Ostrea edulis uncharacterized LOC125681791 (LOC125681791), mRNA blastn 355 86.1 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Ostrea Ostrea edulis
1496745 1496745 PRJNA1113956_P_NODE_23002_length_228_cov_2.735484_g22662_i0 PRJNA1113956 23002 228 2.735484 6.23690352 Patella vulgata 6465 Mollusca Mollusca 158 4.189999999999999e-34   NTclustered gi|2506322087|ref|XM_050547997.2| 6465 g22662 i0 79.913 3.81578947368421 229 35 98 10 6 228 1670 1893 PREDICTED: Patella vulgata DNA repair and recombination protein RAD54-like (LOC126819775), mRNA blastn 870 158 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
1496767 1496767 PRJNA1113956_P_NODE_7582_length_552_cov_1.258873_g7249_i0 PRJNA1113956 7582 552 1.258873 6.94897896 Bradybaena similaris 145626 Mollusca Mollusca 534 4.43e-147   NTclustered gi|2912999222|dbj|AP039605.1| 145626 g7249 i0 84.182 0.996376811594203 550 87 99 0 1 550 54020415 54020964 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 24, sequence blastn 550 534 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
4048801 4048801 PRJNA1113956_P_NODE_12604_length_364_cov_1.185567_g12264_i0 PRJNA1113956 12604 364 1.185567 4.31546388 Saccostrea echinata 191078 Mollusca Mollusca 58.4 7.42e-4   NTclustered gi|2628378382|ref|XM_061339954.1| 191078 g12264 i0 94.595 0.101648351648352 37 2 10 0 131 167 1012 1048 PREDICTED: Saccostrea echinata cilia- and flagella-associated protein 251-like (LOC133204205), mRNA blastn 37 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea echinata
7874875 7874875 PRJNA1113956_P_NODE_2367_length_1210_cov_17.187335_g1102_i1 PRJNA1113956 2367 1210 17.187335 207.9667535 Ostrea edulis 37623 Mollusca Mollusca 86.1 1.22e-11   NTclustered gi|2507356719|ref|XM_048922008.2| 37623 g1102 i1 80.469 0.146280991735537 128 12 10 11 711 836 2756 2640 PREDICTED: Ostrea edulis uncharacterized LOC125681791 (LOC125681791), mRNA blastn 177 86.1 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Ostrea Ostrea edulis
9149754 9149754 PRJNA1113956_P_NODE_8628_length_499_cov_1.129108_g8290_i0 PRJNA1113956 8628 499 1.129108 5.63424892 Bradybaena similaris 145626 Mollusca Mollusca 374 9.159999999999999e-99   NTclustered gi|2912990805|dbj|AP039595.1| 145626 g8290 i0 80.691 147.685370741483 492 85 98 9 1 486 20623232 20623719 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 14, sequence blastn 73695 374 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
11700669 11700669 PRJNA1113956_P_NODE_15850_length_304_cov_1.333333_g15510_i0 PRJNA1113956 15850 304 1.333333 4.05333232 Octopus sinensis 2607531 Mollusca Mollusca 255 2.01e-63   NTclustered gi|1697381098|ref|XM_029799679.1| 2607531 g15510 i0 85.2 12.9407894736842 250 35 82 2 57 304 442 193 PREDICTED: Octopus sinensis uncharacterized LOC115229305 (LOC115229305), mRNA blastn 3934 255 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus sinensis
16799168 16799168 PRJNA1113956_P_NODE_8434_length_509_cov_1.149083_g8096_i0 PRJNA1113956 8434 509 1.149083 5.84883247 Biomphalaria glabrata 6526 Mollusca Mollusca 486 1.15e-132   NTclustered gi|2502143854|ref|XM_056017726.1| 6526 g8096 i0 89.947 2.80157170923379 378 37 74 1 33 410 1654 1278 PREDICTED: Biomphalaria glabrata uncharacterized LOC106065353 (LOC106065353), transcript variant X1, mRNA blastn 1426 486 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
18073676 18073676 PRJNA1113956_P_NODE_9295_length_468_cov_2.230380_g8956_i0 PRJNA1113956 9295 468 2.23038 10.4381784 Bradybaena similaris 145626 Mollusca Mollusca 132 5.68e-26   NTclustered gi|2912990805|dbj|AP039595.1| 145626 g8956 i0 73.723 1.57051282051282 411 76 83 20 80 467 47932472 47932071 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 14, sequence blastn 735 132 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
21898931 21898931 PRJNA1113956_P_NODE_838_length_1844_cov_12.159797_g762_i0 PRJNA1113956 838 1844 12.159797 224.22665668 Crassostrea virginica 6565 Mollusca Mollusca 213 8.24e-50   NTclustered gi|1242769886|ref|XM_022468655.1| 6565 g762 i0 78.261 1.34544468546638 345 65 21 8 30 372 2544 2208 PREDICTED: Crassostrea virginica flocculation protein FLO11-like (LOC111125150), mRNA blastn 2481 213 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Crassostrea Crassostrea virginica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;