RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1113956" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1113956 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1023692 1023692 PRJNA1113956_P_NODE_12181_length_374_cov_8.637874_g11841_i0 PRJNA1113956 12181 374 8.637874 32.30564876 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 691 0   NTclustered gi|1802599797|gb|MT001206.1| 41631 g11841 i0 100 99.1550802139037 374 0 100 0 1 374 509 882 Colpoda sp. strain HFCC1227 small subunit ribosomal RNA gene, partial sequence blastn 37084 691 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
12502602 12502602 PRJNA1113956_P_NODE_13950_length_335_cov_4.503817_g13610_i0 PRJNA1113956 13950 335 4.503817 15.08778695 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 619 6.91e-173   NTclustered gi|89077592|gb|DQ388599.1| 63136 g13610 i0 100 99.5283582089552 335 0 100 0 1 335 14 348 Colpoda steinii strain Sp1 small subunit ribosomal RNA gene, partial sequence blastn 33342 619 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda steini
18073520 18073520 PRJNA1113956_P_NODE_12615_length_364_cov_1.003436_g12275_i0 PRJNA1113956 12615 364 1.003436 3.65250704 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.035   NTclustered gi|145509286|ref|XM_001440550.1| 5888 g12275 i0 100 0.0769230769230769 28 0 8 0 50 77 1433 1406 Paramecium tetraurelia uncharacterized protein (GSPATT00038846001), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;