RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1113956" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 1 ✖

bioproject 1

  • PRJNA1113956 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1023770 1023770 PRJNA1113956_P_NODE_17161_length_284_cov_1.454976_g16821_i0 PRJNA1113956 17161 284 1.454976 4.1321318399999996 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 76.8 1.56e-9   NTclustered gi|167843288|gb|EU339291.1| 5786 g16821 i0 97.727 1.95070422535211 44 1 15 0 89 132 1936 1979 Dictyostelium purpureum strain WS321 tRNA-Pro gene, complete sequence; ATPase subunit 9 (atp9) gene, complete cds; and large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 554 76.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;