RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1112809" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1112809 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7873153 7873153 PRJNA1112809_P_NODE_197127_length_233_cov_2.837500_g193852_i0 PRJNA1112809 197127 233 2.8375 6.611375 Vulcanimicrobium alpinum 3016050 Bacteria Bacteria 171 5.519999999999999e-38   NTclustered gi|2416250577|dbj|AP025523.1| 3016050 g193852 i0 80.93 90.3562231759657 215 41 92 0 2 216 315560 315346 Vulcanimicrobium alpinum WC8-2 DNA, complete genome blastn 21053 171 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Vulcanimicrobium Vulcanimicrobium alpinum
11698974 11698974 PRJNA1112809_P_NODE_194730_length_239_cov_3.000000_g191455_i0 PRJNA1112809 194730 239 3 7.17 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 128 3.47e-25   NTclustered gi|2874253918|emb|OY970243.1| 3107663 g191455 i0 80.814 10.7949790794979 172 25 70 8 70 237 1720090 1719923 MAG: Candidatus Eremiobacteraeota bacterium isolate MFD09603.bin.1.33 genome assembly, chromosome: 1 blastn 2580 128 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
16796113 16796113 PRJNA1112809_P_NODE_123174_length_292_cov_2.684932_g119899_i0 PRJNA1112809 123174 292 2.684932 7.84000144 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 132 3.38e-26   NTclustered gi|2874253953|emb|OY970278.1| 3107663 g119899 i0 76.448 137.989726027397 259 51 87 10 38 292 2017676 2017424 MAG: Candidatus Eremiobacteraeota bacterium isolate MFD04463.bin.c.10 genome assembly, chromosome: 1 blastn 40293 132 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;