RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1112809" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1112809 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4048632 4048632 PRJNA1112809_P_NODE_92204_length_348_cov_2.745455_g88929_i0 PRJNA1112809 92204 348 2.745455 9.5541834 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 254 8.42e-63   NTclustered gi|909719647|gb|KT185627.1| 5778 g88929 i0 80.851 2.20977011494253 329 57 94 5 21 347 25288 25612 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 769 254 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11698144 11698144 PRJNA1112809_P_NODE_145370_length_268_cov_1.528205_g142095_i0 PRJNA1112809 145370 268 1.528205 4.0955894 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 226 1.37e-54   NTclustered gi|909719647|gb|KT185627.1| 5778 g142095 i0 81.955 0.992537313432836 266 48 99 0 3 268 7433 7698 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 266 226 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13776384 13776384 PRJNA1112809_P_NODE_111411_length_310_cov_1.869198_g108136_i0 PRJNA1112809 111411 310 1.869198 5.7945138 Vermamoeba 1260114 Tubulinea other_Eukaryota 568 2.3299999999999995e-157   NTclustered gi|909719645|gb|KT185625.1| 5778 g108136 i0 99.677 98.1612903225806 310 1 100 0 1 310 5615 5306 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 30430 568 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21425703 21425703 PRJNA1112809_P_NODE_93977_length_344_cov_2.191882_g90702_i0 PRJNA1112809 93977 344 2.191882 7.54007408 Vermamoeba 1260114 Tubulinea other_Eukaryota 614 3.309999999999999e-171   NTclustered gi|909719645|gb|KT185625.1| 5778 g90702 i0 98.837 40.9302325581395 344 4 100 0 1 344 5343 5000 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 14080 614 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;