contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJNA1112809" and tax_phylum = "Thermodesulfobacteriota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1494300 | 1494300 | PRJNA1112809_P_NODE_157562_length_256_cov_2.437158_g154287_i0 | PRJNA1112809 | 157562 | 256 | 2.437158 | 6.23912448 | Geomonas paludis | 2740185 | Bacteria | Bacteria | 272 | 1.64e-68 | NTclustered | gi|2233265061|gb|CP096574.1| | 2740185 | g154287 | i0 | 85.938 | 89.48828125 | 256 | 34 | 99 | 2 | 1 | 255 | 553862 | 553608 | Geomonas paludis strain RG22 chromosome, complete genome | blastn | 22909 | 272 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Geobacterales | Geobacteraceae | Geomonas | Geomonas paludis | ||
| 9147830 | 9147830 | PRJNA1112809_P_NODE_189088_length_242_cov_1.544379_g185813_i0 | PRJNA1112809 | 189088 | 242 | 1.544379 | 3.73739718 | Desulfomicrobium baculatum | 899 | Bacteria | Bacteria | 196 | 9.52e-46 | NTclustered | gi|256576994|gb|CP001629.1| | 525897 | g185813 | i0 | 82.379 | 2.73140495867769 | 227 | 38 | 93 | 2 | 1 | 226 | 2829180 | 2829405 | Desulfomicrobium baculatum DSM 4028, complete genome | blastn | 661 | 196 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfomicrobiaceae | Desulfomicrobium | Desulfomicrobium baculatum | ||
| 10422845 | 10422845 | PRJNA1112809_P_NODE_141569_length_272_cov_1.306533_g138294_i0 | PRJNA1112809 | 141569 | 272 | 1.306533 | 3.5537697600000002 | Desulfomicrobium sp. ZS1 | 2952228 | Bacteria | Bacteria | 331 | 2.86e-86 | NTclustered | gi|2269306666|gb|CP100351.1| | 2952228 | g138294 | i0 | 88.603 | 3.82352941176471 | 272 | 31 | 100 | 0 | 1 | 272 | 3131627 | 3131356 | Desulfomicrobium sp. ZS1 chromosome, complete genome | blastn | 1040 | 331 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfomicrobiaceae | Desulfomicrobium | Desulfomicrobium sp. ZS1 | ||
| 11697796 | 11697796 | PRJNA1112809_P_NODE_127310_length_287_cov_2.799065_g124035_i0 | PRJNA1112809 | 127310 | 287 | 2.799065 | 8.03331655 | Solidesulfovibrio magneticus | 184917 | Bacteria | Bacteria | 108 | 5.58e-19 | NTclustered | gi|239794502|dbj|AP010904.1| | 573370 | g124035 | i0 | 79.47 | 20.9268292682927 | 151 | 31 | 53 | 0 | 10 | 160 | 1979492 | 1979342 | Desulfovibrio magneticus RS-1 DNA, complete genome | blastn | 6006 | 108 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Solidesulfovibrio | Solidesulfovibrio magneticus | ||
| 16796381 | 16796381 | PRJNA1112809_P_NODE_137174_length_276_cov_2.773399_g133899_i0 | PRJNA1112809 | 137174 | 276 | 2.773399 | 7.65458124 | Desulfomicrobium sp. ZS1 | 2952228 | Bacteria | Bacteria | 472 | 1.64e-128 | NTclustered | gi|2269306666|gb|CP100351.1| | 2952228 | g133899 | i0 | 97.464 | 344.445652173913 | 276 | 7 | 100 | 0 | 1 | 276 | 2625547 | 2625272 | Desulfomicrobium sp. ZS1 chromosome, complete genome | blastn | 95067 | 472 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfomicrobiaceae | Desulfomicrobium | Desulfomicrobium sp. ZS1 | ||
| 17601323 | 17601323 | PRJNA1112809_P_NODE_77194_length_392_cov_2.539185_g73919_i0 | PRJNA1112809 | 77194 | 392 | 2.539185 | 9.9536052 | Desulfomicrobium | 898 | Bacteria | Bacteria | 438 | 2.459999999999999e-118 | NTclustered | gi|470484403|ref|NR_076646.1| | 899 | g73919 | i0 | 90.881 | 185.566326530612 | 329 | 27 | 99 | 3 | 63 | 390 | 43 | 369 | Desulfomicrobium baculatum strain INMI strain X 23S ribosomal RNA gene, complete sequence | blastn | 72742 | 438 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfomicrobiaceae | Desulfomicrobium | Desulfomicrobium baculatum | ||
| 20620547 | 20620547 | PRJNA1112809_P_NODE_147437_length_266_cov_1.450777_g144162_i0 | PRJNA1112809 | 147437 | 266 | 1.450777 | 3.85906682 | Geoalkalibacter halelectricus | 2847045 | Bacteria | Bacteria | 165 | 2.99e-36 | NTclustered | gi|2304895958|gb|CP092109.1| | 2847045 | g144162 | i0 | 78.03 | 50.4624060150376 | 264 | 56 | 99 | 2 | 1 | 263 | 2573890 | 2574152 | Geoalkalibacter halelectricus strain SAP-1 chromosome | blastn | 13423 | 165 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Desulfuromonadales | Geoalkalibacteraceae | Geoalkalibacter | Geoalkalibacter halelectricus | ||
| 22700089 | 22700089 | PRJNA1112809_P_NODE_130278_length_284_cov_1.459716_g127003_i0 | PRJNA1112809 | 130278 | 284 | 1.459716 | 4.14559344 | Geomonas | 2651583 | Bacteria | Bacteria | 58.4 | 5.64e-4 | NTclustered | gi|2060227305|gb|CP077683.1| | 2847989 | g127003 | i0 | 100 | 0.327464788732394 | 31 | 0 | 11 | 0 | 219 | 249 | 822686 | 822716 | Geomonas subterranea strain RG2 chromosome, complete genome | blastn | 93 | 58.4 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Geobacterales | Geobacteraceae | Geomonas | Geomonas subterranea | ||
| 24444991 | 24444991 | PRJNA1112809_P_NODE_118740_length_299_cov_1.283186_g115465_i0 | PRJNA1112809 | 118740 | 299 | 1.283186 | 3.83672614 | Thermodesulfomicrobium sp. WS | 3004129 | Bacteria | Bacteria | 174 | 5.69e-39 | NTclustered | gi|2416254156|dbj|AP027130.1| | 3004129 | g115465 | i0 | 79.07 | 1.87290969899666 | 258 | 50 | 86 | 4 | 24 | 279 | 396139 | 395884 | Thermodesulfomicrobium sp. WS DNA, complete genome | blastn | 560 | 174 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfomicrobiaceae | Thermodesulfomicrobium | Thermodesulfomicrobium sp. WS |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;