RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1112809" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1112809 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2770324 2770324 PRJNA1112809_P_NODE_162723_length_252_cov_1.094972_g159448_i0 PRJNA1112809 162723 252 1.094972 2.75932944 Roseithermus sacchariphilus 2893045 Bacteria Bacteria 165 2.81e-36   NTclustered gi|1417721500|gb|CP030158.1| 2893045 g159448 i0 79.098 39.531746031746 244 47 96 3 9 250 3747145 3746904 Roseithermus sacchariphilus strain MEBiC09517 chromosome, complete genome blastn 9962 165 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Roseithermus Roseithermus sacchariphilus
11698022 11698022 PRJNA1112809_P_NODE_139210_length_274_cov_2.318408_g135935_i0 PRJNA1112809 139210 274 2.318408 6.35243792 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 95.3 4.12e-15   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g135935 i0 81.982 12.4160583941606 111 20 41 0 2 112 273026 272916 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 3402 95.3 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
12502279 12502279 PRJNA1112809_P_NODE_199830_length_226_cov_3.745098_g196555_i0 PRJNA1112809 199830 226 3.745098 8.46392148 Rubrivirga 1434037 Bacteria Bacteria 267 6.599999999999999e-67   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g196555 i0 88.158 157.690265486726 228 21 99 6 1 225 805648 805424 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 35638 267 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
16325879 16325879 PRJNA1112809_P_NODE_169673_length_249_cov_0.875000_g166398_i0 PRJNA1112809 169673 249 0.875 2.17875 Salinibacter 146918 Bacteria Bacteria 460 3.16e-125   NTclustered gi|1419235469|gb|CP030716.1| 146919 g166398 i0 100 91.1847389558233 249 0 100 0 1 249 1048842 1048594 Salinibacter ruber strain P13 chromosome, complete genome blastn 22705 460 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;